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0 votes
1 reply
1.4K views
merging .cool files of replicates
cool interaction-matrix hic
updated by kalavattam 85 • | written by rls_08 4
0 votes
3 replies
1.1K views
How should I draw a roc curve to generalize the performance of a model?
auc plot roc performance classification
updated by Mensur Dlakic 3.0K • | written by ssko 2
1 vote
4 replies
2.0K views
Estimating effective genome size when retaining a higher-confidence subset of multi-mappers in alignment data
multi-mapper effective-genome-size complexity mapq
updated by GenoMax 16K • | written by kalavattam 85
0 votes
2 replies
1.2K views
is there any way to normalize the counts and compare it for the splicing quantification?
majiq splicing rmats
written by PK 13
0 votes
0 replies
903 views
News: Epigenomics course
hic atacseq epigenomics multiomics chipseq
written by Physalia-courses 281
0 votes
1 reply
861 views
Compare gene expression in mice and human RNA-seq data
rna-seq expression
written by Wang Cong 2
0 votes
6 replies
3.1K views
Forum: Preparation needed to get into Bioinformatics
education
updated by Ram 4.5K • | written by 周添思 0
0 votes
2 replies
1.1K views
Retrieve the structure information from mirbase
structure mirbase
written by Coleman 0
0 votes
9 replies
3.1K views
Create custom references for Macaca fascicularis using Cellranger -arc for multi omics
-arc. cellranger multi-omics. macaca fascicularis.custom-references.
updated by GenoMax 16K • | written by tranhangk15cnsh 0
0 votes
3 replies
1.2K views
Quast misassembles
misassembles genome assembly quast
updated by lieven.sterck 1.6K • | written by RCMC 1
0 votes
1 reply
572 views
create karyotype file
karyotype
updated by Pierre Lindenbaum 17K • | written by ag18090 0
1 vote
5 replies
2.2K views
DESeq2 analysis
deseq2 rnaseq interaction
updated by Santosh Anand 582 • | written by rajdeepboral00 7
1 vote
4 replies
2.6K views
Loading VisiumHD dataset
spatial transcriptomics seurat visiumhd
updated by Arup Ghosh 402 • | written by bio_info 1
0 votes
4 replies
8.9K views
different ways of downloading SRA metadata
sra geo
updated by Wayne 208 • | written by Mathias 9
0 votes
4 replies
1.2K views
ABYSS Assembly Output
assembly abyss
updated by shelkmike 201 • | written by Tom Brady 0
0 votes
4 replies
1.7K views
bcftools not calling variants that appear high quality
bcftools dnaseq snps
updated by Pierre Lindenbaum 17K • | written by bertb 2
0 votes
1 reply
983 views
Gene ontology and NCBI blast analysis
gene-ontology protein-sequence blast
updated by Istvan Albert 10K • | written by souparnika 0
0 votes
0 replies
1.0K views
Exact steps to calculate the SNP index to identify locality of EMS induced mutation
samtools bcftools index snp
written by n.anuragsharma 4
0 votes
3 replies
1.7K views
How to download metadata from SRA database
metadata sra download
updated by Wayne 208 • | written by Gabriel 0
0 votes
3 replies
1.5K views
Trouble using sortmerna: How to get nonrRNA output from paired fastq files
rnatranscripts sortmerna fastq
updated by GenoMax 16K • | written by Ezekiel 1
1 vote
5 replies
1.4K views
Gene expression of a particular gene
gene-expression deseq2 rnaseq
updated by Santosh Anand 582 • | written by rajdeepboral00 7
0 votes
1 reply
1.2K views
What are the risque of keeping variants which read have low mapping quality?
gatk mutect2 bwa variant-calling
updated by Ram 4.5K • | written by lacb 12
0 votes
2 replies
1.8K views
SQK-LSK112 adapter sequences
nanopore
updated by Dmitriy 0 • | written by zack.saud 5
0 votes
3 replies
1.7K views
Using COUNT with bcftools filter
bcftools vcf filter
written by mykle hoban 4
0 votes
1 reply
1.3K views
mafft --auto alignment
--auto alignment mafft
updated by Max Sikolenko 8 • | written by dbenig 0
0 votes
0 replies
1.3K views
Job: Bioinformatician - South Australian Genomics Centre (SAGC) at SAHMRI
bioinformatician
written by Careers@SAHMRI 5
0 votes
4 replies
2.1K views
Check the normalizations available in a hic file?
juicer-tools hic-pro hic
written by rls_08 4
4 votes
0 replies
784 views
Tool: High Resolution Imaging of Illumina Flowcell Surface Properties
illumina novaseqx bbtools
written by Brian Bushnell 2.0K
0 votes
2 replies
1.3K views
identifying 3'utrs for multiple transcripts of genes from a summarized experiment.
biomart transcriptome utr
written by RNAseqer 30
0 votes
1 reply
992 views
ChIPSeeker not annotating with hg38, stuck on hg19
chipseeker atac-seq
updated by GenoMax 16K • | written by John 0
0 votes
1 reply
776 views
I cannot obtain my counts in galaxy server
galaxy
updated by Ram 4.5K • | written by Hossein 0
0 votes
6 replies
1.6K views
Illumina HumanHT-12 V4.0 analysis but I only have the .IDAT files
illumina expression-analysis microarray
updated by Basti 210 • | written by isaac_mani 0
1 vote
0 replies
780 views
edgeR questions for use with cytometry counts
edger cytometry diffcyt
written by SamGG 15
0 votes
6 replies
2.3K views
Analyze read lengths in Illumina data
human illumina libraries
updated by Pierre Lindenbaum 17K • | written by María José 1
1 vote
3 replies
1.6K views
Convert Long Nanopore reads to Illumina Paired end reads
illumina sequencing reads nanopore
updated by Pierre Lindenbaum 17K • | written by Mark 6
0 votes
0 replies
433 views
(Too?) Simple Deep Mutational Sequencing pipeline for fastq to enrichment score
deep-mutational-sequencing enrichment-score
written by Flipstone 0
0 votes
1 reply
1.2K views
Seeking Public Nanopore Datasets (FAST5 + FASTA/FASTQ) for DNA Storage Research
nanopore-sequencing machine-learning fast5 dna
updated by Ram 4.5K • | written by Dev 0
0 votes
3 replies
1.2K views
Umi_tools regex blank output
regex umi_tools
written by amyruthvandiver 0
0 votes
0 replies
578 views
RAxML or BV-BRC tree
raxml tree phylogenic bv-brc
written by anna 0
0 votes
0 replies
665 views
Choosing the better input files for COGclassifier tool
classifier cog
written by anna 0
0 votes
0 replies
633 views
Anti-ligand , receptor blocking and cell cell interaction analysis
cellchat cell nichenet single
written by carolofharvest 6
0 votes
0 replies
1.2K views
How can I linearize certain segments within an existing protein structure constraining to volumetric grids using PyMOL scripting?
python protein-structure structural-bioinformatics protein
written by Aman Vishwakarma 1
0 votes
5 replies
1.8K views
Overlapping regions in bedGraph
bedgraphtobigwig bedgraph
updated by Ram 4.5K • | written by Aayush 0
1 vote
3 replies
2.9K views
How to estimate and visualize haplotype blocks on a phased VCF/BCF
haplotype vcf
updated by cmdcolin 448 • | written by William 540
0 votes
3 replies
1.0K views
Low RIN, novel samples
rin rna
written by Emilie 1
0 votes
7 replies
1.9K views
Why don't mRNA levels measure protein synthesis rates?
mrna translation protein-synthesis rnaseq
updated by Ram 4.5K • | written by Qroid 4
2 votes
9 replies
2.2K views
Drosophila melanogaster dm3 intron percentage too high
drosophila sequence nucleotide intron genomics
updated by Istvan Albert 10K • | written by Christian 2
0 votes
3 replies
2.8K views
Finding high number of significant genes by FindMarkers by Seurat
findmarkers single-cell seurat
updated by jared.andrews07 1.9K • | written by Rosa Icela 0
0 votes
3 replies
1.2K views
What is the next step after getting the raw counts matrix for RNA-seq data?
deseq2 transriptomics rna-seq
updated by Istvan Albert 10K • | written by rajdeepboral00 7
0 votes
11 replies
4.4K views
How can I linearize certain residues within an existing protein structure to create a dumbbell-shaped structure?
pymol python biopython structural-bioinformatics
written by Aman Vishwakarma 1
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