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0 votes
1 reply
816 views
Differentially expressed genes analysis using IPA?
differential gene expression
updated by ATpoint ATpoint • written by goyal.shiwali • goyal.shiwali
0 votes
2 replies
942 views
FilterMutectCalls producing empty vcf file
mutect2 wes filtermutectcalls gatk
written by ChumBucket2024 • ChumBucket2024
0 votes
9 replies
2.1K views
File size increase after host read removal?
metagenomics quality-control wgs
updated by Ram Ram • written by akazen • akazen
0 votes
1 reply
754 views
What does the start in diffbind profile plot x-axis mean exactly?
diffbind chip-seq
written by SpartanII • SpartanII
0 votes
2 replies
903 views
Disease-Disease Association data
gene-ontology omim disease hpo
updated by mark.ziemann mark.ziemann • written by singhankit973 • singhankit973
0 votes
10 replies
2.8K views
ChromHMM - annotation of chromatin states
state annoation
updated by Alex Reynolds Alex Reynolds • written by Bioinformatics_16 • Bioinformatics_16
0 votes
4 replies
1.5K views
Vcf Filtering
vcf filtering af
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Marc Ibanez • Marc Ibanez
0 votes
2 replies
7.6K views
How to Clump In Plink?
plink gwas
updated by meggo • meggo • written by Thorerges • Thorerges
0 votes
8 replies
1.8K views
Adding p value above plot
p deseq2 value violin boxplot
updated by DareDevil DareDevil • written by a.stef.44 • a.stef.44
0 votes
1 reply
3.2K views
Use of Pval v.s. Padj Statistic in Pre-Ranked GSEA Analysis
gene ontology gsea rna-seq
updated by i.sudbery i.sudbery • written by BioTinker • BioTinker
0 votes
0 replies
956 views
News: Online Course: Spatial Omics in R/Bioconductor | 19-21 May 2025
spatial-omics bioconductor tidyverse omics
written by Physalia-courses Physalia-courses
0 votes
2 replies
990 views
Bionumerics installation files and tutorials after discontinuation
discontinued bionumerics
updated by hberghs • hberghs • written by Mad104301 • Mad104301
0 votes
1 reply
1.1K views
How to trim sequences
trimming sequencing phylogenetics
updated by Mensur Dlakic Mensur Dlakic • written by PF • PF
0 votes
0 replies
1.4K views
Job: Postdoctoral Fellow (Quantitative Modeling Group)
bioengineering computational-biology
updated by Ram Ram • written by BerkeleyLab • BerkeleyLab
0 votes
1 reply
662 views
How to download metadata for the Broad Firehose RNA-seq data?
metadata tcga rnaseq
updated by GenoMax GenoMax • written by mebius_band • mebius_band
0 votes
4 replies
2.9K views
Interpreting Varied Survival Times in TCGA-BRCA Data
survival kaplan-meier tcga analysis survival curves
updated by wenbinm • wenbinm • written by Siqi • Siqi
0 votes
2 replies
1.5K views
Web- based bioinformatics tool/s for identification of cysteine-rich proteins
cysteine proteins
updated by Mensur Dlakic Mensur Dlakic • written by lukhanyomakhabane • lukhanyomakhabane
0 votes
10 replies
2.0K views
constructing de novo assembly of plant short reads
short reads assembly plants
written by Bushra Bibi Bushra Bibi
0 votes
0 replies
846 views
News: Course live online Intro Bayesian Analysis, February 17th-21st, 2025
python bayesian rproject statistics
written by Sole • Sole
3 votes
0 replies
26K views
Herald: The Biostar Herald for Tuesday, January 21, 2025
herald
written by Biostar Biostar
1 vote
2 replies
843 views
Creating pangenome graphs using vcf files?
pangenome
written by Uveyik • Uveyik
0 votes
0 replies
736 views
News: Computational Pangenomics course
pangenomics pangenome-graphs
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.3K views
gene annotation tool recommendations for oomycetes
oomycetes annotation
updated by lieven.sterck lieven.sterck • written by colindaven colindaven
1 vote
15 replies
6.7K views
STAR aligner - Is this still maintained?
star aligner rnaseq
updated by GenoMax GenoMax • written by Joshi • Joshi
0 votes
4 replies
1.8K views
Does anyone know how to transform the following transcript ID's from TCGA isoform data
ucsc isoform tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by B.N. • B.N.
0 votes
0 replies
599 views
eQTL Analysis for Structural Variants (SV) – Seeking Relevant Software
eqtl sv
written by chiyong4783 • chiyong4783
0 votes
1 reply
792 views
Building pangenome graphs in minigraph-cactus using vcf?
pangenome vcf cactus
updated by Mark Mark • written by Uveyik • Uveyik
0 votes
2 replies
1.3K views
RSEM and STAR
star rnaseq rsem
written by rajdeepboral00 • rajdeepboral00
0 votes
0 replies
577 views
Interpretaion of tensorQTL output for ieQTL analysis
tensorqtl ieqtl beta-values
updated by Ram Ram • written by cool.aditya286 • cool.aditya286
0 votes
6 replies
2.6K views
How to compare gene prediction
gene-prediction
updated by lieven.sterck lieven.sterck • written by Acervo • Acervo
0 votes
0 replies
666 views
ArchR extending gene activity till nearest promoter
archr addgenescoremat
written by Bastien Hervé Bastien Hervé
0 votes
0 replies
463 views
Heritability
greml heritability
written by am29 • am29
0 votes
1 reply
600 views
Transcriptome Reconstruction for Transcript Discovery
taco stringtie
updated by michael.ante michael.ante • written by Emy Alade • Emy Alade
0 votes
2 replies
959 views
Having trouble running Desktop version of Pse-in-One
pse-in-one dna
written by George • George
0 votes
1 reply
755 views
Comparison of different gene catalog abundance
assembly catalog metagenome illumina gene
updated by mark.ziemann mark.ziemann • written by young_bioinformatician young_bioinformatician
0 votes
1 reply
1.5K views
Nothing happens when running GATK VCF Validate Variants. Output warning: processed 0 (zero) total variants
gatk vcf snp validatevariants
updated by Pierre Lindenbaum Pierre Lindenbaum • written by maikejet • maikejet
0 votes
3 replies
1.4K views
Annotate GWAS result gene function from GFF file
gwas gff gff3 annotation
updated by lieven.sterck lieven.sterck • written by alnus • alnus
0 votes
0 replies
556 views
WGCNA sample-data preprocessing order
gene-expression wcgna microarray network data-preprocessing
written by Reuben • Reuben
0 votes
3 replies
2.9K views
drug sensitivity prediction
deseq2 oncopredict r drug
updated by Luka • Luka • written by luffy • luffy
0 votes
1 reply
720 views
VCFfiltering
vcf bcftools freebayes
updated by Mark Mark • written by Peter • Peter
0 votes
0 replies
523 views
Analysis and Verification of Mathematical Equations in the Theory of Consciousness
consciousness brian neuron neurobiology
updated by GenoMax GenoMax • written by steklolampa • steklolampa
0 votes
0 replies
593 views
Genetic Trio Phasing with EAGLE2 using hg38
trios haplotype phasing genetics
written by heskett • heskett
0 votes
3 replies
1.6K views
b37 liftover
b37 liftover
written by spesks • spesks
0 votes
0 replies
789 views
Plugging output files from phyluce phasing workflow into Structure
phyluce uce bam phasing structure
written by gabe.somarriba • gabe.somarriba
0 votes
0 replies
705 views
gcpp ERROR: [pbbam] read group ERROR: basecaller version is too short:
header pacbio bam basecaller gcpp
written by therosng • therosng
0 votes
1 reply
880 views
circos ignoring the ticks and plots
diagram circos
updated by GenoMax GenoMax • written by baibhu1234 • baibhu1234
0 votes
4 replies
2.0K views
Strange offsetting in deeptools?
deeptools
written by Elijah • Elijah
0 votes
4 replies
1.4K views
Merging gvcf files between Dragen and other calling tools
gvcf merge bcftools
written by tacrolimus tacrolimus
0 votes
6 replies
2.3K views
Download SRA raw data using efetch
sra-toolkit efetch biopython
written by biofysikos • biofysikos
0 votes
7 replies
2.0K views
Issue with CIBERSORTx Error 139
cibersortx docker error193
updated by jared.andrews07 jared.andrews07 • written by Hamdache • Hamdache
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