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0 votes
0 replies
1.5K views
Tutorial: ONLINE COURSE – Machine Learning using Python (MLUP01)
machine-learning python
updated by Ram Ram • written by oliverhooker oliverhooker
0 votes
2 replies
832 views
Demultiplexing Custom Barcodes
rna-seq custom-barcodes demultiplexing
written by meetmet • meetmet
0 votes
6 replies
2.0K views
Sequence length distribution after trimming
bbduk trimming fastqc fastq
updated by GenoMax GenoMax • written by ijarne • ijarne
0 votes
1 reply
843 views
de novo and reference-guided assemblies
de-novo reference-guided assemblies
updated by Ram Ram • written by ZuelTech • ZuelTech
1 vote
0 replies
26K views
Herald: The Biostar Herald for Monday, January 27, 2025
herald
updated by Istvan Albert Istvan Albert • written by Biostar Biostar
0 votes
6 replies
1.4K views
Differential Expression Analysis in single-cell data
single-cell
written by frarodmar17 • frarodmar17
0 votes
1 reply
804 views
Accounting for Within-Subject Correlation in Microbiome Multiclass Classification
microbiome classification longitudinal panel repeated-measures
updated by Mensur Dlakic Mensur Dlakic • written by ssko • ssko
0 votes
7 replies
1.4K views
Genome 2 GEnome Alignment and Unmapped contigs extraction
assemblies minimap2 genome alignment fungus
written by SomeOne • SomeOne
0 votes
1 reply
647 views
Merge genotypes of two vcf files
vcf vcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by pablo pablo
0 votes
1 reply
982 views
Abyss output scaffolds.fa file contains kmer sized scaffolds
scaffolds abyss
updated by lieven.sterck lieven.sterck • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.0K views
Detect changes in cell viability with bulk RNA-seq?
deg viability rna
written by txema.heredia • txema.heredia
0 votes
2 replies
1.5K views
Origin of unmapped reads
scrna bam mapping sequencing shortreads
updated by dthorbur dthorbur • written by Kay • Kay
0 votes
0 replies
405 views
PNI Cohort for Gastric Gastric
invasion dataset request perineural
written by p-radwan.derbala • p-radwan.derbala
0 votes
3 replies
1.4K views
biopython UI?
biopython
written by tada • tada
0 votes
0 replies
521 views
Using Limma (Batch effect removal bulk rna-seq)
batchremoval bulkrnaseq limma
updated by GenoMax GenoMax • written by odi • odi
0 votes
1 reply
1.5K views
Covarites in GWAS via GCTA
covariate gcta fastgwa
updated by GenoMax GenoMax • written by Star:) • Star:)
0 votes
1 reply
1.8K views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated by GenoMax GenoMax • written by Mark • Mark
0 votes
0 replies
719 views
News: Spring School in Bioinformatics - ONLINE, 31 March–4 April 2025
ngs phylogenomics rnaseq
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.0K views
Protein annotation, gene annotation, hordeum vulgare RNA-Seq
protein vulgare rna-seq hordeum gene
updated by colindaven colindaven • written by martta95 • martta95
0 votes
1 reply
1.7K views
On applying spike-in-derived scaling factors to ChIP-seq data: adjust for background signal (input) or not?
spike-in deeptools normalization chip-seq scaling-factor
written by kalavattam • kalavattam
0 votes
4 replies
1.8K views
WGCNA: Can we use high power for signed network?
powerselection rna-seqdata wgcna networkanalysis
written by Vinesh • Vinesh
0 votes
2 replies
1.2K views
SRA fastq modify by 10x valid fastq
fastq
written by wyuan37 • wyuan37
0 votes
0 replies
944 views
How can I get raw CPTAC protein quantification data ?
cptac proteomics proteins python transcriptome
written by AlexStar • AlexStar
0 votes
0 replies
642 views
News: Workshop: Virtual RNA-seq Analysis, February 4-6
gene rnaseq workshop expression
written by spu24005 • spu24005
0 votes
1 reply
990 views
Integration of Cut&Tag to ATACseq and RNAseq data - impact of a mutation
rnaseq cut_tag atacseq
updated by LChart LChart • written by Alexandre Eeckhoutte • Alexandre Eeckhoutte
1 vote
3 replies
2.3K views
Started running InterProscan locally. Looks like the process isn't progressing well. Can you look at the report?
genome interproscan annotation
updated by Olivier • Olivier • written by Vijith • Vijith
0 votes
1 reply
847 views
biomaRt R package
r biomart transcript_id ensembl
updated by manaswwm manaswwm • written by rajdeepboral00 • rajdeepboral00
0 votes
2 replies
1.3K views
How to Process PacBio RS FASTQ Files from SRA for Genome Coassembly with Illumina Reads?
coassembly fastq pacbio
updated by courtney.stairs • courtney.stairs • written by till • till
0 votes
0 replies
641 views
How to convert omim database files to annovar compatible
omim wes annovar wgs
written by aiswaryabioinfo • aiswaryabioinfo
0 votes
1 reply
1.2K views
How can I add new column into Metadata of Seurat.obj in Xenium analysis
seurat xenium spatial transcriptomics
updated by Bastien Hervé Bastien Hervé • written by geno89 • geno89
1 vote
1 reply
1.3K views
Facing issue while running PHASTEST docker
phage prophage phastest docker
updated by GenoMax GenoMax • written by Himu22 • Himu22
0 votes
1 reply
904 views
FPKM without normalization
fpkm classification normalization
updated by ATpoint ATpoint • written by maryak • maryak
0 votes
3 replies
1.1K views
PacBio long read processing
pacbio_sequel_ii long_read
updated by GenoMax GenoMax • written by Mai.Nabil • Mai.Nabil
0 votes
4 replies
2.2K views
16S SILVA with Kraken2 doesn't classfying at species level
taxonomy 16s kraken2 metagenomics silva
written by Aytaç • Aytaç
0 votes
12 replies
5.5K views
What additional info is found in BAM files from PacBio HiFi compared to Fastq files
bam hifi fastq pacbio
updated by Billy Rowell • Billy Rowell • written by Eric Normandeau Eric Normandeau
0 votes
3 replies
1.3K views
Reducing runtime of low-score alignments
python pairwise-alignment alignment
updated by Istvan Albert Istvan Albert • written by benjlishani7 • benjlishani7
0 votes
4 replies
1.5K views
Discover novel transcripts
transcriptomic assembly stringtie stringtie--merge
updated by Istvan Albert Istvan Albert • written by Emy Alade • Emy Alade
0 votes
3 replies
1.5K views
bcftools mpileup returns vcf files with only headers
samtools bcftools vcf
updated by DavideSant • DavideSant • written by Brenden • Brenden
0 votes
1 reply
835 views
How to calculate MAF from vcf files ? (SNPVersity from maizeGDB)
snps vcf maf cfr
updated by Ram Ram • written by Joséphine • Joséphine
0 votes
2 replies
918 views
Setting ploidy level in gatk
ploidy
written by Bushra Bibi Bushra Bibi
0 votes
3 replies
1.1K views
File h5ad for SEVtras
to how
updated by yura.grabovska • yura.grabovska • written by Matteo • Matteo
0 votes
2 replies
1.1K views
chromatin loop annotation for hic
enhancer chromatin hi-c promoter
written by J.F.Jiang J.F.Jiang
0 votes
2 replies
1.0K views
capmq and verifybamid
bam capmq vcf verifybamid
written by Peter Chung Peter Chung
0 votes
4 replies
1.4K views
ribosomeProfilingQC help
ribo-seq
written by tommy • tommy
0 votes
0 replies
537 views
How to interpret Phylonet MCMC_BiMarkers result file + Running time problem
phylonet
written by ylkim9 • ylkim9
0 votes
0 replies
707 views
Converting gaf files to sam/bam?
bam gaf sam
written by guntul • guntul
0 votes
2 replies
2.0K views
Error from Using FindVariableFeatures Function in Seurat Package
findvariablefeatures seurat
written by Binghong • Binghong
0 votes
3 replies
1.2K views
Removing confounding batch effects
sva limma batch-effect
written by Kaiwen • Kaiwen
0 votes
2 replies
1.0K views
Best genome assembly tool?
unicycler assembly genome spades
updated by Istvan Albert Istvan Albert • written by maria.seg • maria.seg
0 votes
5 replies
1.6K views
How to do allele specific expression analysis (ASE)
ase
updated by GenoMax GenoMax • written by chentongouc • chentongouc
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