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shome
shome
Reputation:
10
Joined:
10.6 years ago
Last seen:
1.5 years ago
Location:
United States
Latest posts by user
0 votes
1 reply
857 views
How to obtain spliced and unspliced counts from parse biosciences generated count data ?
scrnaseq transcriptomics single-cell
updated by Bastien HervĂ© Bastien HervĂ© • written by shome • shome
0 votes
2 replies
876 views
Difference in count values depends on tool and reference genome version
rna-seq
updated by Ram Ram • written by shome • shome
0 votes
3 replies
1.2K views
Getting less DE genes when incorporating all samples
rna-seq differential-expression deseq2
updated by jv jv • written by shome • shome
0 votes
0 replies
795 views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter motif
updated by Ram Ram • written by shome • shome
0 votes
1 reply
2.5K views
DESEq2 results : low counts too many genes
rna-seq differential-expression deseq2
updated by Ram Ram • written by shome • shome
0 votes
1 reply
0 views
Comment: Comment: DESEQ2 analysis - PCA plot
written by shome • shome
0 votes
5 replies
2.0K views
DESEQ2 analysis - PCA plot
rna-seq differential-expression deseq2
updated by bkleiboeker • bkleiboeker • written by shome • shome
0 votes
1 reply
869 views
Reference genome to map embryonic mouse sequences
genome rna-seq mouse bulk
updated by ATpoint ATpoint • written by shome • shome
0 votes
1 reply
0 views
Comment: Comment: How to make scanpy read gene names to plot instead of read sequences
written by shome • shome
0 votes
3 replies
2.1K views
How to make scanpy read gene names to plot instead of read sequences
single-cell scanpy scrna-seq
updated by Ram Ram • written by shome • shome
0 votes
0 replies
693 views
Carrying out differential analysis for Abseq data
scrnaseq rnaseq abseq expression differential
written by shome • shome
0 votes
1 reply
810 views
Bioinformatics method to find which genes have GC and TATA boxes ?
gcbox
updated by Ram Ram • written by shome • shome
0 votes
0 replies
0 views
Comment: Comment: What is cut-off for significance in DE analysis in sc-RNA seq data
written by shome • shome
0 votes
4 replies
2.4K views
What is cut-off for significance in DE analysis in sc-RNA seq data
bulk expression differential single rna-seq cell
updated by ATpoint ATpoint • written by shome • shome
0 votes
0 replies
0 views
Comment: Comment: How to find which DE genes fall under statistically significant criteria using s
written by shome • shome
0 votes
1 reply
1.3K views
How to find which DE genes fall under statistically significant criteria using scanpy DEG analysis
rna-seq expression cell single differential scanpy
written by shome • shome
0 votes
0 replies
583 views
How to obtain all gene details from each of the clusters formed in UMAP
scanpy sc-rna
written by shome • shome
0 votes
1 reply
0 views
Comment: Comment: How to analyse RNA-seq data stored over certain period of time
written by shome • shome
0 votes
4 replies
1.5K views
How to analyse RNA-seq data stored over certain period of time
rna-seq bulk
updated by rpolicastro rpolicastro • written by shome • shome
0 votes
1 reply
1.1K views
Tools to detect the bacterial sequences from mouse RNA-seq data
single rna-seq cell
updated by Thind amarinder Thind amarinder • written by shome • shome
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