Tools to detect the bacterial sequences from mouse RNA-seq data
Is it possible to find out the bacterial sequences from host RNA-seq data ? Also,how to find the extent of bacterial expression in this data ?
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Thind amarinder
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shome •
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shome •
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There is the possibility to look for various bacterial contamination in the host RNA-Seq data, but to get an idea about the abundance of various bacterial species. Take a look on this paper and decontaminer tool