Is it possible to get genes' promoters' sequences with RNA-seq data?
Hi Friends, I have a DEGs list of one medicinal plant which does not have the whole genome sequences.(just has RNA-seq data) I found the TFs but because the whole genome sequence is not available :
Is it possible to find TFBS's sequences from RNA seq data and DEGs list?and how? Is there any database or software to find gene promoter sequences?
Thank you
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shoujun.gu
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hodatn •
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hodatn •
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How do you get the DEGs list?
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shoujun.gu
i mean without knowing the sequence, how do you align your reads and get the counts?
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