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updated 12 days ago by
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13 days ago by
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13 days ago by
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13 days ago by
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updated 13 days ago by
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written 4.1 years ago by
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13 days ago by
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13 days ago by
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updated 13 days ago by
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written 13 days ago by
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Tutorial:
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Recent Replies
Answer: The Biostar Herald for Tuesday, June 01, 2021
by
Istvan Albert
88k
**The Biostar Herald** publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant…
Comment: The Biostar Herald for Tuesday, June 01, 2021
by
Istvan Albert
88k
The Bi`ostar Herald publishes user submitte`d links of bioinformatics relevance. It aims to provide a summary of interesting and relevant i…
Comment: Asking for content suggestions for updated bioinformatics book
by
jared.andrews07
★
10k
If you have no content on single cell analysis, then you could definitely add a section on that (using scanpy). Though that could likely be…
Comment: Can you assemble with merged paired end reads and unmatched reads as "single end
by
GenoMax
101k
You will need to provide some context. What exactly are you trying to do?
Comment: How to generate single sequence from assembled contigs?
by
Dunois
▴
820
[This][1] review might be somewhat helpful.
[1]: https://www.mdpi.com/2079-7737/9/9/295
Comment: Asking for content suggestions for updated bioinformatics book
by
Dunois
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820
A section on `Snakemake` and another on general purpose sequence visualization tools?
Answer: How to generate single sequence from assembled contigs?
by
Nitin Narwade
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670
I think a better way to patch the contigs and perform genome finishing is, one should go for some long-read sequencing (like pacBio OR nano…
Comment: How to generate single sequence from assembled contigs?
by
arriyaz.nstu
▴
10
Thank you for pointing out the prokaryotic fact.
**If we take a reference sequence from NCBI and align our contigs against it, can we gene…
Comment: When is recommended to remove or keep Unpaired "Orphan" reads in downstream anal
by
Devon Ryan
99k
You have to align them separately, which is a minor annoyance.
Comment: How to generate single sequence from assembled contigs?
by
lieven.sterck
11k
few points to get this thread started:
* if the data is not available then no tool will create a single DNA seq. Don't know this specific …
Comment: Can you assemble with merged paired end reads and unmatched reads as "single end
by
pdhrati02
•
0
@genomax Hi, sorry to reply on such an old post but I have a similar question. The kneaddata output has unmatched_1.fq and unmatched_2.fq w…
Comment: Problem with limma in microarray analysis
by
Kevin Blighe
73k
I see, regarding the line with `rowMeans()`, this will center your data around 0, which is 'yes' okay for PCA. This is the same as doing `s…
Comment: When is recommended to remove or keep Unpaired "Orphan" reads in downstream anal
by
pdhrati02
•
0
@devon Hi, sorry to reply on such an old post but I have a similar question. The kneaddata output has unmatched_1.fq and unmatched_2.fq whi…
Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
by
ATpoint
49k
Fyi, the little hand icon on the bottom allows you to grap&drag your posts so you could have simply dragged the comment into the answer fie…
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