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1 vote
2 replies
123 views
Problem with lfcShrink() in differential gene expression analysis.
lfcsrink dge deseq2 apeglm
written by Gaurab 1
0 votes
8 replies
236 views
[HELP] AMR++ Host and Contaminant Removal, ERROR running $BWA mem
commandlineinterface amrplusplus bwa resistome
updated by bielporte10 2 • | written by naqar.queens 0
1 vote
1 reply
72 views
Tool: BioErrors: a catalogue of bioinformatics error messages that point at the wrong thing
snakemake nextflow conda error troubleshooting
updated by Jeremy Leipzig 2.3K • | written by bielporte10 2
0 votes
6 replies
469 views
Struggling to download using SRA toolkit from an Accession list
ascession toolkit sra
updated by bielporte10 2 • | written by SethJ 0
0 votes
4 replies
145 views
Is bcftools merge a right choice to combine three rice populations?
bcftools rice haplotypecaller populations gatk
written by Chander Kant Chaudhary 1
0 votes
1 reply
98 views
Problem with QQ plot in sQTL
sqtl rna-seq
updated by Pierre Lindenbaum 17K • | written by Bilotta 0
0 votes
8 replies
522 views
FASTA File Concatenation Script Not Working
fasta python
updated by trichter 0 • | written by Suriya 2
0 votes
0 replies
47 views
background dataset for SHAP
prediction machine learning ml
written by fnepo 4
0 votes
1 reply
78 views
Limma, multi-level experiment, duplicatecorrelation (-)
duplicatecorrelation limma
updated by GenoMax 16K • | written by Trinh 0
0 votes
0 replies
87 views
Job: Software Engineer, Data & ML -- For plants, Foray Bioscience, Cambridge, MA
machine plant biology biomanufacturing learning
updated by GenoMax 16K • | written by nico 0
5 votes
3 replies
240 views
Latest up-to-date Book available for self learning Genomics data analysis?
genomics
updated by YasirShafique 0 • | written by WUSCHEL 94
1 vote
0 replies
96 views
Tool: Lacuna, cryptic binding pocket detection from a single structure using conformational ensembles
structural-bioinformatics protein-structure drug-discovery python binding-site
updated by GenoMax 16K • | written by Clay 1
1 vote
7 replies
547 views
Forum: For bioinformatics work, which do you prefer: ChatGPT or Claude, and why?
bioinformatics chatgpt claude
updated by Michael Dondrup 5.6K • | written by Ifthekar Hussain 1
1 vote
1 reply
86 views
News: Online course: Introduction to Computational Biology
metagenomics multiomics singlecellrnaseq computationalbiology
updated by Daniel 1 • | written by Physalia-courses 281
0 votes
4 replies
171 views
Understanding which Falco modules are important for assessing read quality
ngs metagenomics
written by Ish 0
0 votes
3 replies
986 views
AMRFinderPlus input fasta file for clinical isolates
amrfinder
updated by Jesse 0 • | written by Adriana 0
0 votes
1 reply
779 views
Issue with AMR gene identification using tools like CARD (RGI), abricate, Patric, ariba, amrfinderplus.
resistant-gene
updated by Jesse 0 • | written by sharmatina189059 11
0 votes
6 replies
319 views
Tool: Alignment-free DNA comparison via spectral resonance (TEES) — open-source tool
dna-sequence-analysis phylogenetics alignment-free spectral-analysis open-source-python
updated by shelkmike 201 • | written by superperson1 0
0 votes
3 replies
1.4K views
qPCR RT experiment set up
qpcr mirna qpcr rt-qpcr
updated by calistarose 0 • | written by Maria17 4
0 votes
0 replies
123 views
Tool: TEES Genome Passport: A deterministic 100% accurate DNA identification method (SHA‑256 based)
alignment-free dna-identification
updated by colindaven 844 • | written by superperson1 0
0 votes
0 replies
66 views
Tool: GSE Matrix Cleaner: In-browser streaming tool to clean & normalize large GEO Series Matrices
normalization limma geo microarray rna-seq
written by 庆 0
0 votes
0 replies
79 views
News: Another free RNA-Seq DE book
rna-seq de dea
written by bacon4000 8
0 votes
2 replies
383 views
Forum: Looking for a bioinformatics researcher to review a single-cell computational methodology
trajectory-inference rna-velocity cellrank single-cell scrna-seq
updated by Arup Ghosh 402 • | written by Matteo 0
0 votes
4 replies
2.5K views
RNA-seq data: Contradictory counts vs. variance/dispersion trend?
rna-seq rna-seq
updated by ATpoint 9.1K • | written by rebeliscu 6
1 vote
1 reply
134 views
Forum: Transition into industry and a bit confused about what I should target like role
discussion
updated by nelnour 8 • | written by dossoukponganfleming 1
0 votes
0 replies
53 views
Tool: biom-viewer — instant, lazy-loading viewer for .biom tables (macOS)
microbiome macos biom visualization
written by yarin 0
0 votes
0 replies
67 views
Different pathway predictions from KOfamScan/KEGG-Decoder and METABOLIC for the same MAGs
data shotgun
written by sveta5678 0
2 votes
3 replies
259 views
Forum: Am I Way Out of My league? Early Career and realistic job prospects
bachelorsdegree earlycareer
updated by Joe 2.2K • | written by Vstation 2
0 votes
0 replies
107 views
Job: Job: Software Engineer (Genomics Platform & Cloud Optimization) - USA
software job engineer
updated by colindaven 844 • | written by Lara Finley 0
1 vote
2 replies
149 views
Sharing a late-fusion multimodal pipeline for genomic, topological, and
pipelines genomics machine-learning software python
written by nadalferra 1
1 vote
1 reply
124 views
Dealing with highly correlated features for disease classification
pathway machine prediction learning
updated by nelnour 8 • | written by fnepo 4
0 votes
1 reply
113 views
correct way to determine unique sites in VCF files
bedtools vcf bcftools
updated by Pierre Lindenbaum 17K • | written by Matteo Ungaro 16
0 votes
0 replies
69 views
News: EMBL-EBI Virtual Training Course | Introduction to RNA-seq and functional interpretation 2027
bioinformatics science analysis data
written by EMBL Events 2
1 vote
1 reply
148 views
Forum: Biostars merch
merchandise
updated by GenoMax 16K • | written by Michael Dondrup 5.6K
0 votes
1 reply
94 views
Pooling multiple Illumina PE reads of the same sample to increase coverage
pe coverage illumina reads
updated by mark.ziemann 199 • | written by RCMC 1
0 votes
4 replies
239 views
Anyone have COSMIC v98?
sarek cosmic vep
written by neil_patel 0
0 votes
3 replies
215 views
What is the Zika virus genome in this paper?
homework
updated by Istvan Albert 10K • | written by Greenhorn 0
0 votes
3 replies
181 views
Opposite OD450 gradient in ELISA
elisa offtopic
written by farahnazir2 0
1 vote
0 replies
73 views
Tool: ggvariant V0.2.0 : Tidy, 'ggplot2'-Native Visualization for Genomic Variants
genomics bioinformatics
written by Joash Joshua 0
7 votes
1 reply
611 views
Herald: The Biostar Herald for Wednesday, December 17, 2025
herald
updated by vascarta678 0 • | written by Biostar 380
0 votes
3 replies
625 views
Extracting sequences from tBlastn results(BLAST standalone)
tblastn
updated by SeqBench 41 • | written by bpaddy 0
0 votes
1 reply
748 views
GATK HaplotypeCaller missed variants in amplicon gene panel data
amplicon gene_panel haplotypecaller variant_calling gatk
updated by SeqBench 41 • | written by Sofya 0
0 votes
3 replies
208 views
Extraction of 16s rna feom while genome sequencing data
metagenomics 16s rna
updated by SeqBench 41 • | written by rana.elromh 0
0 votes
3 replies
201 views
Freebayes-gave different result that what was expected
freebayes vcf variant-calling crispr
written by namck 0
0 votes
1 reply
113 views
News: Online course - AI in Drug Discovery
machinelearning drugdiscovery deeplearning gnns ai
updated by Henry 2 • | written by Physalia-courses 281
0 votes
1 reply
101 views
News: COURSE: AI for Drug Discovery – Machine Learning, Deep Learning and Graph Neural Networks | 12–15 October
deeplearning ai cnns machinelearning drugdiscovery
updated by Henry 2 • | written by Physalia-courses 281
0 votes
0 replies
59 views
HPRC v2.1 per-chromosome .og node IDs — global translation table available?
hprc odgi vg
written by Alexandria A. 0
0 votes
0 replies
64 views
News: Online course - Shotgun Metagenomics Processing and Analysis - 23–26 November
metagenomics microbiome taxonomicprofiling
written by Physalia-courses 281
1 vote
6 replies
363 views
rRNA in RNA samples and how does it affect DGE analysis
rrna rna rnaseq transcriptomics
updated by mark.ziemann 199 • | written by anna.gatseva 1
1 vote
1 reply
117 views
How to use haplotype genome to get a better mapping result
mapping genome haplotype
updated by Michael Dondrup 5.6K • | written by dwpeng 14
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