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GERP Score for variants

Hello,

I need to find GERP score for some variants. Other than the normal annotation pipeline, is there any online web based tool to calculate this score?

Please suggest.

Thanks

ngs variants prediction pathogenic
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updated by Begonia_pavonina • Begonia_pavonina • written by adarsh • adarsh

1 answer

Dear Adarsh, Varsome and Mastermnd Genomebase does that: https://varsome.com/

For multiple or bulk queries, you may have to download GERP scores for all positions and awk/grep and find them: http://mendel.stanford.edu/SidowLab/downloads/gerp/

Best, prash

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written by Prash • Prash

Thank you so much for the reply. In VarSome, there are scores from multiple platforms except GERP.

However, I was able to get the GERP++ scores through online VEP, which has annotations from dbNSFP.

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written by adarsh • adarsh

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