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CNV calling

Hello all,

Can anyone please suggest the best open source CNV calling tool that is available, having a decent specificty and sensitivity.

I am using cn.MOPS and ExomeDepth, currently.

But I want to improve the pipeline to get more accurate results.

Please suggest.

Thanks

cnv ngs variant-calling
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updated by Zhenyu Zhang Zhenyu Zhang • written by adarsh • adarsh

You can search for "NGS CNV calling benchmarking" and check out the papers.

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written by barslmn • barslmn

you need to specify somatic or germline

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written by Zhenyu Zhang Zhenyu Zhang

1 answer

Please look at fig2 in this https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8699073/pdf/cancers-13-06283.pdf

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written by Sleepy • Sleepy

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