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rebeliscu
rebeliscu
Reputation:
60 (New)
Joined:
7.6 years ago
Last seen:
8 months ago
Location:
United States
Latest posts by user
0 votes
1 reply
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Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
written by rebeliscu 6
0 votes
0 replies
0 views
Comment: Comment: 10x Cellranger SN RNA-seq BAM file output looks off
written by rebeliscu 6
0 votes
6 replies
2.2K views
10x Cellranger SN RNA-seq BAM file output looks off
cellranger samtools star bam rna-seq
updated by Ram 4.5K • | written by rebeliscu 6
0 votes
0 replies
0 views
Comment: Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
written by rebeliscu 6
0 votes
2 replies
1.3K views
Variant caller reports a homozygous variant genotype, but more reads are associated with reference
bcftools
updated by Ram 4.5K • | written by rebeliscu 6
0 votes
1 reply
1.8K views
BCFtools for somatic vs. germline variant calling
germline-variant bcftools somatic-variant rna-seq
updated by Ram 4.5K • | written by rebeliscu 6
0 votes
1 reply
0 views
Comment: Comment: How to normalize and batch correct SC RNA-seq data from multiple libraries and c
written by rebeliscu 6
0 votes
3 replies
1.9K views
How to normalize and batch correct SC RNA-seq data from multiple libraries and confounded with biological differences
batch rna-seq normalization preprocessing single-cell
updated by LauferVA 497 • | written by rebeliscu 6
0 votes
0 replies
0 views
Comment: Comment: Ensembl variant consequences and classification info in table format
written by rebeliscu 6
0 votes
2 replies
1.2K views
Ensembl variant consequences and classification info in table format
so ensembl api
written by rebeliscu 6
0 votes
0 replies
956 views
VEP: "Given ref" field is empty when a ref. allele was in VCF input
wxs vcf vep
written by rebeliscu 6
1 vote
0 replies
1.1K views
Qualimap whole exome sequencing depth of coverage - use whole genome or exome as reference?
coverage wxs qualimap depth
written by rebeliscu 6
1 vote
0 replies
0 views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
written by rebeliscu 6
0 votes
1 reply
0 views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
written by rebeliscu 6
0 votes
1 reply
0 views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
written by rebeliscu 6
4 votes
8 replies
6.6K views
Base recalibration in normal vs. tumor somatic variant calling in WXS data?
wxs recalibration variant somatic
updated by aldhairmedico 7 • | written by rebeliscu 6
0 votes
1 reply
0 views
Comment: Comment: Exome sequencing one sample on two lanes considered two read groups for marking
written by rebeliscu 6
0 votes
3 replies
1.4K views
Exome sequencing one sample on two lanes considered two read groups for marking of PCR duplicates?
deduplication read groups exome sequencing
updated by GenoMax 16K • | written by rebeliscu 6
0 votes
0 replies
0 views
Comment: Comment: BBDuk quality filtering not producing expected results
written by rebeliscu 6
0 votes
1 reply
0 views
Comment: Comment: BBDuk quality filtering not producing expected results
written by rebeliscu 6
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