Tool: SwiftCNV — a python tool to infer copy number variations (CNVs) from single-cell RNA-seq data
Hi all,
We have created a new python implementation of the original InferCNV method with additional features and designed for seamless interoperability with Anndata objects and Scanpy. It supports summarising CNV signals at the chromosome-arm level and easy handling of the output matrix for dowsntream processing (clustering, UMAP...). In our tests it achieved results comparable to those produced by the original InferCNV but in a faster and more scalable way.
Repository: https://github.com/Computational-Immunogenomics/SwiftCNV
Documentation: https://swiftcnv.readthedocs.io/en/latest/
Comments, issues and suggestions are always welcome!
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adrianparrilla •
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