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Dan
Dan
Reputation:
180
Joined:
7.0 years ago
Last seen:
8 months ago
Location:
United States
Google Scholar:
mNjLK8EAAAAJ
Twitter:
@TrueLiDan

I am a research scientist at Memorial Sloan Kettering Cancer Center, New York City, USA. I am working on cancer multi-omics and I am a big fan of machine learning, statistics, and bioinformatics. This is my personal website: http://www.danli.org/; https://github.com/danli349

Latest posts by user
0 votes
1 reply
1.0K views
invalid class “DimReduc” object in `ArchR`
archr
updated by Bastien Hervé Bastien Hervé • written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: Nature Methods - In Decision column it is written as AIP.. What does it mean?
written by Dan • Dan
0 votes
2 replies
1.7K views
How I should set `STAR` parameters to keep all the intronic reads?
star mapping
updated by dsull dsull • written by Dan • Dan
0 votes
1 reply
0 views
Comment: Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
written by Dan • Dan
1 vote
1 reply
0 views
Comment: Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
written by Dan • Dan
1 vote
1 reply
0 views
Comment: Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
written by Dan • Dan
1 vote
8 replies
3.4K views
The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
rna-velocity
updated by james.hawley • james.hawley • written by Dan • Dan
0 votes
1 reply
0 views
Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
written by Dan • Dan
2 votes
5 replies
2.3K views
Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATAC data analysis?
multiome single-cell
updated by ATpoint ATpoint • written by Dan • Dan
2 votes
1 reply
1.1K views
Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq data?
chip-seq atac-seq
updated by Papyrus Papyrus • written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: umap failed to cluster the cells
written by Dan • Dan
1 vote
0 replies
749 views
How to predict gene amplification from RNAseq and ATACseq data?
amplification atac
written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: How to make the profile line of `deepTools::plotHeatmap` more smooth?
written by Dan • Dan
1 vote
2 replies
1.8K views
How to make the profile line of `deepTools::plotHeatmap` more smooth?
plotheatmap deeptools
written by Dan • Dan
2 votes
0 replies
0 views
Answer: Answer: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: `MOFAobject@expectations` is empty list
written by Dan • Dan
1 vote
2 replies
1.1K views
`MOFAobject@expectations` is empty list
mofa2
updated by Ram Ram • written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
written by Dan • Dan
0 votes
0 replies
0 views
Comment: Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
written by Dan • Dan
3 votes
3 replies
1.6K views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
rseqc
written by Dan • Dan
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