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Mark
Mark
Reputation:
60
Joined:
4.6 years ago
Last seen:
10 months ago
Location:
Canada
Twitter:
markpampuch

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Latest posts by user
0 votes
2 replies
6.1K views
Best set of tools / workflows for predicting the biosynthesis pathways of complex organic molecules
ngs pathways
updated by Ram Ram • written by Mark • Mark
0 votes
5 replies
9.0K views
Best way to do protein structure guided similarity search?
alphafold blast structure proteins
updated by yl759 • yl759 • written by Mark • Mark
0 votes
3 replies
11K views
Automatically annotating a feature using a genbank file
annotation genbank wgs
updated by Kevin Blighe Kevin Blighe • written by Mark • Mark
0 votes
2 replies
3.2K views
combine hifiasm and hifiasm-ont assemblies.
wgs ngs genomics sequencing
updated by shelkmike shelkmike • written by Mark • Mark
0 votes
1 reply
873 views
Run hifiasm without error correction module?
hifiasm assembly wgs nanopore genomics
updated by shelkmike shelkmike • written by Mark • Mark
1 vote
0 replies
806 views
Any tips for optimizing an all vs all alignment with minimap2
mapping nanopore genomics minimap2
written by Mark • Mark
0 votes
0 replies
0 views
Comment: Comment: How to fix this this tangle in my bacterial genome assembly
written by Mark • Mark
2 votes
2 replies
973 views
How to fix this this tangle in my bacterial genome assembly
misassembly assembly genomics ngs
written by Mark • Mark
0 votes
2 replies
1.0K views
Is there a way to import a large amount of regions of interest into IGV
sequencing igv genomics ngs
updated by GenoMax GenoMax • written by Mark • Mark
0 votes
1 reply
1.5K views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated by shelkmike shelkmike • written by Mark • Mark
0 votes
1 reply
1.4K views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated by GenoMax GenoMax • written by Mark • Mark
0 votes
7 replies
1.8K views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated by colindaven colindaven • written by Mark • Mark
0 votes
0 replies
762 views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
written by Mark • Mark
0 votes
0 replies
949 views
Looking to Simulate Nanopore R10.4.1 and PacBio HiFi whole genome sequencing reads for 3 specific organisms
pacbio nanopore sequencing reads wgs
written by Mark • Mark
1 vote
3 replies
1.6K views
Convert Long Nanopore reads to Illumina Paired end reads
illumina sequencing reads nanopore
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Mark • Mark
0 votes
1 reply
1.8K views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated by GenoMax GenoMax • written by Mark • Mark
0 votes
1 reply
0 views
Comment: Comment: Kmerfinder database with bacteria, archea, and eukaryotic data
written by Mark • Mark
0 votes
3 replies
1.1K views
Kmerfinder database with bacteria, archea, and eukaryotic data
kmer
updated by lieven.sterck lieven.sterck • written by Mark • Mark
0 votes
2 replies
1.0K views
Question about metabolic pathway prediction using only DNA sequencing data
metabolism genomics ngs
updated by hakimbazol • hakimbazol • written by Mark • Mark
1 vote
1 reply
1.1K views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated by colindaven colindaven • written by Mark • Mark
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