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Kmerfinder database with bacteria, archea, and eukaryotic data

Is there a K-mer database that has all the kmers known across the tree of life? So far I've only been using on that has bacterial species.

kmer
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updated by lieven.sterck lieven.sterck • written by Mark • Mark

1 answer

lmgtfy ...

www.kmerdb.com ?

paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC11070822/

don't know it myself but seems to be what you're looking for.

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written by lieven.sterck lieven.sterck

Those databases also seems to be split by domain. I’m looking for a single database of kmers across all species across the tree of life, excluding viruses

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written by Mark • Mark

Maybe contact them perhaps they have such a dataset as well? (or they might give you some tips on where to find it or if you can compile it in some way?)

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written by lieven.sterck lieven.sterck

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