Converting SRA Data to FASTQ and Saving Directly to S3
I am currently downloading SRA data stored in AWS S3.
I would like to download SRA data from S3 and convert it to FASTQ format, then save it directly to my own S3 bucket without storing it on a local server. Is there a recommended way to achieve this? I would greatly appreciate any guidance or suggestions.
Thank you in advance for your help.
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Likely not possible since you can't mount S3 from SRA (I guess this is directly from NCBI?) locally. Not sure if you can stream and pipe the data into a conversion tool.
You could save yourself the hassle and look to see if you can find fastq format files directly on ENA using --> sra-explorer : find SRA and FastQ download URLs in a couple of clicks