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1 vote
5 replies
1.2K views
In silico prediction if a phage can invade a bacterium
phage bacterium
written by A_heath 18
0 votes
4 replies
4.6K views
BEAST and BEAGLE installed using conda environment, how to connect?
beast beauti
updated by sbrobeson 0 • | written by kabir.deb 9
0 votes
4 replies
1.4K views
Dimensionality reduction using RNA and protein expression
dimensionality-reduction rna-seq spatial
written by noodlejackson 4
0 votes
2 replies
1.7K views
java out of memory error through beagle for imputation
beagle imputation java
updated by Ram 4.5K • | written by Bushra Bibi 8
0 votes
2 replies
1.6K views
BioPython load/save from SnapGene
biopython
written by tada 0
2 votes
1 reply
26K views
Herald: The Biostar Herald for Monday, February 10, 2025
herald
updated by Bastien Hervé 680 • | written by Biostar 380
0 votes
1 reply
943 views
Get bond angles for nucleotides in pdb/cif structure file
cif cryoem pymol pdb structure
updated by dthorbur 350 • | written by noodle 65
0 votes
7 replies
1.5K views
merging .fastq.gz files results in corrupted files
corrupt gzip
written by rDNA 2
0 votes
1 reply
789 views
Installing VEP for a Specific Chromosome (e.g., Chromosome 1) is not possible??
vep
updated by dthorbur 350 • | written by Manuel 5
0 votes
3 replies
1.2K views
Blast+ remote search for refseq reference genome
api refseq
updated by GenoMax 16K • | written by Chiranth 0
0 votes
1 reply
800 views
Finding target for the biologically active compound
target-prediction
updated by dthorbur 350 • | written by Pragya 0
0 votes
3 replies
1.4K views
single-cell transcriptomics and bulk proteomics data integration
integration omics data
updated by AB 39 • | written by frarodmar17 4
0 votes
3 replies
1.3K views
Split genotypes in VCF file
vcf genotype dipcall
written by Biomonika (Noolean) 323
0 votes
2 replies
773 views
clinker, a gene cluster visualization tool, crashed its online site
cluster gene
updated by ATpoint 9.1K • | written by yinfang 0
1 vote
2 replies
1.3K views
Using limma on a very low amount of genes
de-analysis limma
updated by colindaven 844 • | written by ijarne 3
1 vote
2 replies
1.6K views
Snakemake version 8.27.1 on LSF cluster
metagenomics snakemake shotgun kraken2
updated by DBScan 53 • | written by John 1
1 vote
3 replies
1.2K views
Bcftools extracting list of markers by chr and pos
bcftools
updated by Ram 4.5K • | written by am29 6
0 votes
1 reply
577 views
differential gene expression in male and female samples
clcworkbench rnaseq
updated by ATpoint 9.1K • | written by BioS 0
0 votes
0 replies
685 views
News: Online Course: Machine Learning Methods for Longitudinal Data with Python
longitudinal-data machine-learning deep-learning omics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
890 views
Issue with Converting Excel Data to JSON
python classifier json machine-learning
updated by natasha.sernova 399 • | written by Cake Day 0
0 votes
4 replies
1.2K views
Nanopore DRS data
m6a polya-tail drs nanopore
updated by GenoMax 16K • | written by baibhu1234 6
0 votes
1 reply
933 views
Figures and plots for integration of ATAC and RNA seq data
atac-seq rna-seq
updated by jared.andrews07 1.9K • | written by SpartanII 0
0 votes
1 reply
951 views
Issue with picard index in my one chr reference fasta file
samtofastq
written by Manuel 5
0 votes
0 replies
639 views
News: course: Generalised Linear Models in R - Online, 24–28 February.
r generalised-linear-models glm
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
778 views
News: Seafood Genomics course - Online, February 25-28
qpcr genomic-traceability nanopore seafood-genomics
updated by Jeremy Leipzig 2.3K • | written by Physalia-courses 281
0 votes
8 replies
1.7K views
Bowtie2 keeps exiting with "Error reading _plen[] array:"
bowtie2
updated by GenoMax 16K • | written by biobaker 0
0 votes
2 replies
1.6K views
How to Generate tissue_lowres_image.png from tissue_hires_image.png for spatial transcriptomics?
seurat spatial-transcriptomics
updated by Ram 4.5K • | written by Genomancer 0
0 votes
0 replies
1.2K views
Job: Ad Astra Fellow – Assistant Professor of Artificial Intelligence in Medical Data Analytics
data-analytics assistant-professor medicine ai
written by Colm 0
0 votes
0 replies
481 views
XP-CLR input files
xpclr
updated by GenoMax 16K • | written by aqilfarooqqais267 0
0 votes
7 replies
3.2K views
Convert VCF files to input file format requiered by XP-CLR1.0 software
xp-clr
updated by aqilfarooqqais267 0 • | written by Famf 3
0 votes
3 replies
1.1K views
Whether personalized pangenome considers allele frequency
pangenome vg
written by Wang Cong 2
0 votes
2 replies
2.0K views
High Variability when Peak Calling with SEACR
macs2 seacr chip
updated by RD 3 • | written by hunter.a.ogg 0
1 vote
1 reply
712 views
Blog: Molecular Simulation: GROMACS Benchmark on 30 different GPUs on SaladCloud
benchmark gpu cloud
written by Prashanth 1
0 votes
1 reply
1.5K views
Job: Job: Bioinformatics Postdoc Position at Columbia University
aging single-cell
written by Qinghua 0
0 votes
7 replies
3.4K views
Speed up umap parameter optimisation?
rna-seq umap r
updated by jared.andrews07 1.9K • | written by noodlejackson 4
0 votes
1 reply
932 views
Eigencor plot after limma::removeBatchEffect
deseq2 pcatools
updated by jared.andrews07 1.9K • | written by f2ff7a46 0
0 votes
2 replies
880 views
Error in running MToolBox
ngs variant-calling mtoolbox mitochondria
written by adarsh 8
0 votes
3 replies
1.0K views
Extract reads that didn't contribute to miRNAs following miRDeep2 analysis
mirna mirdeep2 small rna
updated by GenoMax 16K • | written by jammydodger123456 4
0 votes
3 replies
1.6K views
Should I Use p-value or Adjusted p-value for Differential Methylation Analysis (Illumina EPIC v2)?
dnamethylation illuminaepicv2 differentialmethylationanalysis
updated by i.sudbery 2.3K • | written by Srinka 2
0 votes
1 reply
864 views
MuSE sump: Segmentation fault (core dumped)
error muse core somatic sump dump
updated by Arup Ghosh 402 • | written by Marie 0
0 votes
1 reply
1.1K views
Unicycler error
human illumina libraries unicycler
updated by Arup Ghosh 402 • | written by María José 1
2 votes
1 reply
1.8K views
Job: (Open to Volunteer/Unpaid Roles) Entry-Level Computational Biologist Seeking Internship
scrna internship transcriptomics single-cell
written by Haziq 2
1 vote
0 replies
704 views
Tool: ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity
ggplot2 ggalign
updated by GenoMax 16K • | written by Yun 9
0 votes
2 replies
689 views
Sample replicate for transcriptomic
replicate transcriptomic sample magna daphnia
written by Jane 0
0 votes
0 replies
493 views
CIBERSORTx error when running sc-RNA seq reference dataset
cibersortx cibersort
written by zhbyrd 0
0 votes
0 replies
584 views
Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2 shotgun
bold qiime2 taxonomy assignment kraken2
written by ohtang7 4
0 votes
3 replies
1.1K views
STAR: same read is shown as 'multi-mapping' to the same location of the genome
samtools star rnaseq
updated by lieven.sterck 1.6K • | written by klsywd 1
0 votes
0 replies
347 views
Reconstruction of ancestral phenotypes
phenotypes
written by 1473989647 0
0 votes
6 replies
1.9K views
ERROR: SAM file generated by BWA is corrupted and cannot be processed with SAMTOOLS
samtools bwa ngs alignment sam
updated by jkbonfield 133 • | written by Luwell 0
1 vote
4 replies
933 views
Breaking my 400MB gtf gile into 8 seperate 50MB gtf files
gtf
written by Ezekiel 1
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