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jkbonfield
jkbonfield
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Joined:
9.0 years ago
Last seen:
10 months ago
Location:
United Kingdom
Latest posts by user
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Answer: Answer: How to create a consensus of a contig with samtools or bbmap?
written by jkbonfield jkbonfield
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Answer: Answer: Modify read groups in BAM file
written by jkbonfield jkbonfield
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Comment: Comment: ERROR: SAM file generated by BWA is corrupted and cannot be processed with SAMTO
written by jkbonfield jkbonfield
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Comment: Comment: Should we cite sed / awk in papers?
written by jkbonfield jkbonfield
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Answer: Answer: Parsing error in sam file when converting to bam
written by jkbonfield jkbonfield
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Comment: Comment: Extracting CDS Region of FFAR4 Gene Using Samtools from GRCh38 Reference Genome
written by jkbonfield jkbonfield
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Answer: Answer: Creating CRC32 hashes in a CRAM file header
written by jkbonfield jkbonfield
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Comment: Comment: Noob question. Samtools says my CRAM from Nebula is wonky, what can I do?
written by jkbonfield jkbonfield
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Comment: Comment: Generating consensus sequence from bam file
written by jkbonfield jkbonfield
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Comment: Comment: Need to split a cram file into smaller pieces - how to extract and save cram for
written by jkbonfield jkbonfield
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Answer: Answer: Need to split a cram file into smaller pieces - how to extract and save cram for
written by jkbonfield jkbonfield
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Answer: Answer: filter reads based on mapped length
updated by John Marshall John Marshall • written by jkbonfield jkbonfield
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Comment: Comment: Questions about a bug when transferring cram file to bam file
written by jkbonfield jkbonfield
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Comment: Comment: Questions about a bug when transferring cram file to bam file
written by jkbonfield jkbonfield
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Comment: Comment: samtools filtering
written by jkbonfield jkbonfield
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Comment: Comment: samflags to removes mapped concordantly >1 times
written by jkbonfield jkbonfield
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Comment: Comment: BAM to CRAM and BAM recover with smaller size
written by jkbonfield jkbonfield
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Comment: Comment: Any ways of extracting and filtering read sequences from cram files with samtool
written by jkbonfield jkbonfield
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Comment: Comment: I am trying to generate a bcf file through samtools mpileup but it taking too lo
written by jkbonfield jkbonfield
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Answer: Answer: Generating consensus sequence from bam file
written by jkbonfield jkbonfield
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