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kabir.deb
kabir.deb
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10.1 years ago
Last seen:
2.0 years ago
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United States
Latest posts by user
1 vote
2 replies
1.3K views
How can I Obtain hg38 cancer mutation and variation files
vcf snv variation mutation
updated by gernophil 15 • | written by kabir.deb 9
0 votes
0 replies
0 views
Answer: Answer: How to keep only first part of the name when adding AddOrReplaceReadGroups in
written by kabir.deb 9
0 votes
1 reply
957 views
How to keep only first part of the name when adding AddOrReplaceReadGroups in multiple BAM files at a time?
slurm bash gatk picard
written by kabir.deb 9
0 votes
0 replies
0 views
Comment: Comment: How to proceed with downstream analysis after tumor-only snp calling using Varsc
written by kabir.deb 9
0 votes
3 replies
1.1K views
How to proceed with downstream analysis after tumor-only snp calling using Varscan2?
snv compressing varscan bcftools
written by kabir.deb 9
0 votes
0 replies
0 views
Answer: Answer: How to save the output of VARSCAN results in different vcf names?
written by kabir.deb 9
0 votes
2 replies
1.1K views
How to save the output of VARSCAN results in different vcf names?
snv slurm output varscan
written by kabir.deb 9
0 votes
0 replies
729 views
Looking for ichorCNA tutorial for Tumor fraction estimation?
fraction ichorcna cfdna tumor hmmcopy
written by kabir.deb 9
0 votes
0 replies
696 views
Getting message while running generateMap.pl from hmmcopy_utils
cnv linux mappability hmmcopy_utils
written by kabir.deb 9
0 votes
1 reply
0 views
Comment: Comment: How to join multiple large .tsv (> 20 GB, bed file) files by two identifier?
written by kabir.deb 9
0 votes
4 replies
1.8K views
How to join multiple large .tsv (> 20 GB, bed file) files by two identifier?
bash python r bed
updated by Ram 4.5K • | written by kabir.deb 9
0 votes
0 replies
0 views
Comment: Comment: How to bin bed files (non-standard) into 10000bp window size?
written by kabir.deb 9
0 votes
2 replies
1.8K views
How to bin bed files (non-standard) into 10000bp window size?
bedtools makewindows
updated by Ram 4.5K • | written by kabir.deb 9
0 votes
0 replies
0 views
Comment: C: Error while reading mlc file from CODEML into ggtree/treeio in R
written by kabir.deb 9
0 votes
0 replies
947 views
How to get genes with best Phylogenetic signal from multiple orthologous genes?
phylogeny orthologous simulation
written by kabir.deb 9
0 votes
0 replies
0 views
Answer: A: How to run beast.jar file using Slurm?
written by kabir.deb 9
0 votes
4 replies
4.6K views
BEAST and BEAGLE installed using conda environment, how to connect?
beast beauti
updated by sbrobeson 0 • | written by kabir.deb 9
0 votes
3 replies
4.9K views
How to run 2 programme one after another using single SLURM?
slurm parallel
updated by Mensur Dlakic 3.0K • | written by kabir.deb 9
0 votes
1 reply
0 views
Comment: C: How to remove internal stop codons from BUSCO identified orthologous genes?
written by kabir.deb 9
2 votes
1 reply
1.4K views
How to solve "String index out of Range" problem in macse.jar
macse java
updated by Ram 4.5K • | written by kabir.deb 9
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