How can I Obtain hg38 cancer mutation and variation files
Hi All,
I am looking for publicly available resources that provide cancer mutation and variation files in hg38 reference genome assembly. Can anyone suggest reliable sources or databases that offer somatic mutation and germline variation data in VCF format? I am interested in exploring various types of cancer genomics data.
Most likely I'm looking for gene mutation (SNV) data for 1000 genes.
Tumor Suppressors, Oncogenes, DNA Repair Genes, Cell Cycle Regulators, Signaling Pathway Genes, Other Cancer-Related Genes
Thanks for your help!
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gernophil •
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kabir.deb •
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kabir.deb •
2 answers
Ensembl might be a good start. You can use BioMart tu annotate your dataset with ontologies.
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raphael.B •
Check COSMIC
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gernophil •
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