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2 votes
5 replies
2.1K views
Annotating Illumna epic probes
r illumina epic
updated by Papyrus Papyrus • written by ramiro.barrantes • ramiro.barrantes
0 votes
2 replies
1.1K views
10x WGS coverage enough for genotyping?
germline genotyping coverage
updated by hakimbazol • hakimbazol • written by heskett • heskett
0 votes
0 replies
487 views
Classification of samples into metasis and non metastasis using gene expresssion RNASeq
classification rnaseq
updated by ATpoint ATpoint • written by maryak • maryak
0 votes
0 replies
628 views
News: [Online Course] Genome-Wide Prediction of Complex Traits (March 24-28, 2025)
machinelearning mixedmodels bayesianregression genomicprediction genomicriskscores
written by Physalia-courses Physalia-courses
1 vote
2 replies
1.5K views
Information on sequin RNA spike in standards
sequin spike-in rna-seq
updated by michael.j.apostolides • michael.j.apostolides • written by akainth • akainth
1 vote
10 replies
2.2K views
Snakemake config errors
slurm hpc snakemake
updated by dariober dariober • written by r.ackbersingh • r.ackbersingh
0 votes
4 replies
1.5K views
How to handle paired and unpaired reads in RNAseq pipeline
rnaseq
updated by ATpoint ATpoint • written by mohamadelian1996 • mohamadelian1996
0 votes
1 reply
744 views
"precedence" in genomation R package
wgbs methylation array
written by Burak Özyürek • Burak Özyürek
0 votes
0 replies
572 views
Individual Counts with rMATS
splicing rnaseq rmats
written by coolmattmonkey • coolmattmonkey
0 votes
0 replies
1.5K views
Job: Flatiron Research Fellow, Genomics, Center for Computational Biology
research genomics
written by vanessa vanessa
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, February 03, 2025
herald
written by Biostar Biostar
0 votes
0 replies
843 views
News: GeneBe Hub RFC: We Need Your Feedback
rfc variant annotation
updated by GenoMax GenoMax • written by zasnuty • zasnuty
0 votes
0 replies
589 views
Zero Coverage for Some Exons andTranscripts ater quantification with StringTie
novoassembly stringtie reconstruction rnaseq transcriptome
written by Emy Alade • Emy Alade
0 votes
0 replies
545 views
Strategies for ecDNA sequenced with Illumina.
human illumina libraries
written by María José • María José
0 votes
0 replies
950 views
Looking to Simulate Nanopore R10.4.1 and PacBio HiFi whole genome sequencing reads for 3 specific organisms
pacbio nanopore sequencing reads wgs
written by Mark • Mark
0 votes
1 reply
783 views
ScaleData not saving into SCE object
sce scaledata
updated by yura.grabovska • yura.grabovska • written by Samantha • Samantha
2 votes
0 replies
1.4K views
Tutorial: How to align RNA and DNA 3D structures using ARTEMIS
superposition alignment dna structure rna
written by Eugene F. Baulin • Eugene F. Baulin
0 votes
1 reply
737 views
plant selection for virtual screening
virtual-screening
updated by Ram Ram • written by Isha • Isha
1 vote
1 reply
795 views
Find the highest rs accession number in the latest dbSNP build?
rsid dbsnp
updated by Pierre Lindenbaum Pierre Lindenbaum • written by confirm2two • confirm2two
0 votes
0 replies
593 views
Advice on building custom sequence aligning tool for educational reasons
learning alignment programming rust
written by dalelmccauley • dalelmccauley
0 votes
1 reply
1.2K views
Hi-C Pro
hicpro alignment hic
updated by kalavattam • kalavattam • written by sk_24 • sk_24
1 vote
0 replies
1.5K views
Tutorial: PCA analysis on TCGA bulk RNAseq data
r rnaseq tcga
written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
1.3K views
merging .cool files of replicates
cool interaction-matrix hic
updated by kalavattam • kalavattam • written by rls_08 • rls_08
0 votes
3 replies
1.1K views
How should I draw a roc curve to generalize the performance of a model?
auc plot roc performance classification
updated by Mensur Dlakic Mensur Dlakic • written by ssko • ssko
0 votes
4 replies
2.0K views
Estimating effective genome size when retaining a higher-confidence subset of multi-mappers in alignment data
multi-mapper effective-genome-size complexity mapq
updated by GenoMax GenoMax • written by kalavattam • kalavattam
0 votes
2 replies
1.2K views
is there any way to normalize the counts and compare it for the splicing quantification?
majiq splicing rmats
written by PK • PK
0 votes
0 replies
895 views
News: Epigenomics course
hic atacseq epigenomics multiomics chipseq
written by Physalia-courses Physalia-courses
0 votes
1 reply
851 views
Compare gene expression in mice and human RNA-seq data
rna-seq expression
written by Wang Cong • Wang Cong
0 votes
6 replies
3.0K views
Forum: Preparation needed to get into Bioinformatics
education
updated by Ram Ram • written by 周添思 • 周添思
0 votes
2 replies
1.1K views
Retrieve the structure information from mirbase
structure mirbase
written by Coleman • Coleman
0 votes
9 replies
3.0K views
Create custom references for Macaca fascicularis using Cellranger -arc for multi omics
-arc. cellranger multi-omics. macaca fascicularis.custom-references.
updated by GenoMax GenoMax • written by tranhangk15cnsh • tranhangk15cnsh
0 votes
3 replies
1.2K views
Quast misassembles
misassembles genome assembly quast
updated by lieven.sterck lieven.sterck • written by RCMC • RCMC
0 votes
1 reply
572 views
create karyotype file
karyotype
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ag18090 • ag18090
1 vote
5 replies
2.2K views
DESeq2 analysis
deseq2 rnaseq interaction
updated by Santosh Anand Santosh Anand • written by rajdeepboral00 • rajdeepboral00
1 vote
4 replies
2.5K views
Loading VisiumHD dataset
spatial transcriptomics seurat visiumhd
updated by Arup Ghosh Arup Ghosh • written by bio_info • bio_info
0 votes
4 replies
8.8K views
different ways of downloading SRA metadata
sra geo
updated by Wayne Wayne • written by Mathias Mathias
0 votes
4 replies
1.2K views
ABYSS Assembly Output
assembly abyss
updated by shelkmike shelkmike • written by Tom Brady • Tom Brady
0 votes
4 replies
1.7K views
bcftools not calling variants that appear high quality
bcftools dnaseq snps
updated by Pierre Lindenbaum Pierre Lindenbaum • written by bertb • bertb
0 votes
1 reply
967 views
Gene ontology and NCBI blast analysis
gene-ontology protein-sequence blast
updated by Istvan Albert Istvan Albert • written by souparnika • souparnika
0 votes
0 replies
1.0K views
Exact steps to calculate the SNP index to identify locality of EMS induced mutation
samtools bcftools index snp
written by n.anuragsharma • n.anuragsharma
0 votes
3 replies
1.6K views
How to download metadata from SRA database
metadata sra download
updated by Wayne Wayne • written by Gabriel • Gabriel
0 votes
3 replies
1.5K views
Trouble using sortmerna: How to get nonrRNA output from paired fastq files
rnatranscripts sortmerna fastq
updated by GenoMax GenoMax • written by Ezekiel • Ezekiel
1 vote
5 replies
1.4K views
Gene expression of a particular gene
gene-expression deseq2 rnaseq
updated by Santosh Anand Santosh Anand • written by rajdeepboral00 • rajdeepboral00
0 votes
1 reply
1.1K views
What are the risque of keeping variants which read have low mapping quality?
gatk mutect2 bwa variant-calling
updated by Ram Ram • written by lacb • lacb
0 votes
2 replies
1.8K views
SQK-LSK112 adapter sequences
nanopore
updated by Dmitriy • Dmitriy • written by zack.saud • zack.saud
0 votes
3 replies
1.7K views
Using COUNT with bcftools filter
bcftools vcf filter
written by mykle hoban • mykle hoban
0 votes
1 reply
1.2K views
mafft --auto alignment
--auto alignment mafft
updated by Max Sikolenko • Max Sikolenko • written by dbenig • dbenig
0 votes
0 replies
1.3K views
Job: Bioinformatician - South Australian Genomics Centre (SAGC) at SAHMRI
bioinformatician
written by Careers@SAHMRI • Careers@SAHMRI
0 votes
4 replies
2.0K views
Check the normalizations available in a hic file?
juicer-tools hic-pro hic
written by rls_08 • rls_08
4 votes
0 replies
769 views
Tool: High Resolution Imaging of Illumina Flowcell Surface Properties
illumina novaseqx bbtools
written by Brian Bushnell Brian Bushnell
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