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0 votes
2 replies
2.0K views
Installing ggpubr in Docker container rocker/r-base??
ggpubr dockerfile docker r
updated by Ram 4.5K • | written by giulia.trauzzi 3
0 votes
0 replies
677 views
News: Bayesian Data Analysis in R course - online, March 3-7
bayesian statistics r
written by Physalia-courses 281
1 vote
5 replies
1.8K views
Should we cite sed / awk in papers?
sed awk
updated by ATpoint 9.1K • | written by hello_bioinf 25
0 votes
0 replies
427 views
Briggs model parametes
briggs damage gargammel
written by anna.utili 0
0 votes
10 replies
2.4K views
Nanopore sequencing - plasmid assembly length confusion
assembly long nanopore reads
written by abedkurdi10 19
0 votes
0 replies
845 views
Post-GWAS colocalization analysis VS. variant annotation, what's the difference?
variant annotation snp colocalization gwas
written by sarfdezco 0
0 votes
2 replies
997 views
EDTA ,Transposon detection, repeat modeler and masker
homology_based_te_detection fragmentedte
written by manaswiniparija3 6
0 votes
8 replies
2.2K views
Finding ORFs in a FASTA file
matrixscore orfs motifs motifscoring
updated by Michael Dondrup 5.6K • | written by Melissa 0
0 votes
3 replies
1.5K views
Ilumina Low quality bases at first 20 cycles + PHIX problem
sequencing
updated by GenoMax 16K • | written by alenew.am 1
0 votes
3 replies
1.0K views
HMP dataset download issue (403 error)
hmp dataset microbiome
updated by GenoMax 16K • | written by Emily 7
0 votes
1 reply
709 views
Enrichment Analysis for cCREs
enrichment statstest bedtools ccres fishers
updated by ATpoint 9.1K • | written by alexanderturco1 0
1 vote
0 replies
1.3K views
Job: Postdoctoral Research Position: Developing Novel Algorithms and Tools for Circular RNA Analysis
circrnas biology bioinformatics computational
written by Tobias Jakobi 1
0 votes
10 replies
2.7K views
Per Sequence GC Content fail
fastqc
written by Eduardo 2
1 vote
7 replies
8.3K views
has anyone use trimmomatic with NEBNext adaptors
rna-seq
updated by Johan Zicola 8 • | written by eozcan 1
2 votes
1 reply
945 views
t2t RNAseq alignment with STAR
chm13 t2t rnaseq
updated by GenoMax 16K • | written by eva_u 3
2 votes
0 replies
25K views
Herald: The Biostar Herald for Wednesday, February 19, 2025
herald
written by Biostar 380
1 vote
3 replies
1.2K views
Cell Type annotation showing Normal cells as Cancer cells in single cell analysis.
seurat single_cell spatial-transcriptomics
updated by rfran010 174 • | written by geno89 2
0 votes
0 replies
462 views
Running NGSadmix with pre-calculated ancestral genotype freqs?
admixture ngsadmix lcwgs angsd
written by j.smout.1 0
0 votes
5 replies
1.6K views
Differential Expression and absolute expression
normal deg tumour rna
written by jain72744 1
0 votes
3 replies
1.1K views
Mapping ~100-300bp Sequences to Metagenome-Assembled Genomes
assembly metagenomic
updated by GenoMax 16K • | written by chemokine-1 1
0 votes
1 reply
632 views
Differetial analysis EdgeR
differetial edger analysis
updated by ATpoint 9.1K • | written by maryak 2
0 votes
3 replies
845 views
Can I compare Gene Expression in T Cells from PBMCs vs. Tumor Tissue (for match samples)?
batch-effect-correction integration scrnaseq single-cell harmony
updated by ATpoint 9.1K • | written by Saeedeh Salehi 2
0 votes
2 replies
939 views
multiBamSummary
deeptools multibamsummary reverse-strand
updated by Ram 4.5K • | written by Hina 0
0 votes
2 replies
1.3K views
How to convert CIGAR string to VCF?
cigar vcf alignment variant-calling
updated by Ram 4.5K • | written by Biomonika (Noolean) 323
0 votes
6 replies
1.5K views
Extract FUngal mRNA from RNAseq Data
rnaseq rna fungus humant2t transcriptomics
written by SomeOne 33
0 votes
1 reply
1.0K views
PyMOL truncates part of structure when exporting as .pdb
pymol
updated by Mensur Dlakic 3.0K • | written by jdoesstuff 0
0 votes
0 replies
1.9K views
Job: Research Technician (Bioinformatics Analyst) - Computational Biology Core, Institute for Systems Genomics, UConn
bioinformatics-analyst research-technician
written by spu24005 0
0 votes
1 reply
800 views
CLI Downloading from Human Microbiome Project Given Login + contact failure
microbiome hmp
updated by Arup Ghosh 402 • | written by Maxwell 7
0 votes
2 replies
1.2K views
How to predict targets of miRNAs with indels in the seed region?
seed indels targets mirna
updated by ATpoint 9.1K • | written by jhonatan.henrique 4
0 votes
2 replies
2.4K views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 17-19, 2025 in Berlin, Germany)
transcriptomics scrnaseq singlecell
written by ecSeq Bioinformatics 9
1 vote
6 replies
4.7K views
How To Retrieve The Rna Type From A Pdb File?
rna pdb
updated by Eugene F. Baulin 2 • | written by Noam N. Kremen 6
0 votes
1 reply
1.3K views
How to Analyze 10x Genomics Data with Full-Length R1 and R2 (100bp Each)?
10x-genomics umi single-cell rna-seq cellranger
updated by GenoMax 16K • | written by zbidav 3
0 votes
0 replies
524 views
Mapping OMIM IDs (for diseases) to MeSH IDs
phenotype ontology disease mesh omim
written by singhankit973 2
0 votes
3 replies
2.0K views
Gini Coefficient and Lorenz curve to measure uniformity of coverage
gini lorenz curve coverage uniformity
updated by abascalfederico 123 • | written by am 7
0 votes
6 replies
2.3K views
DESeq2 for multiple groups
usegalaxy limma voom deseq2
written by banaalkhayrat123 0
0 votes
2 replies
1.2K views
Bowtie index size / richness matters ?
bowtie
written by maschi88 0
0 votes
0 replies
781 views
juicer_tools for analyzing Hi-C data
juicer_tools
written by Bioinformatics_16 0
0 votes
1 reply
1.0K views
Limma Voom
differential analysis
updated by ATpoint 9.1K • | written by maryak 2
0 votes
0 replies
775 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study: Application in Bone Regeneration
multi-omics single-cell
written by Novogene 54
0 votes
1 reply
686 views
SNP density visualization with circos in galaxy
visualization circos
updated by Pierre Lindenbaum 17K • | written by ag18090 0
0 votes
2 replies
1.3K views
Unusual File Count in 10x scMultiome Data for Cell Ranger ARC Processing
scmultiome 10x fastq human-cell-atlas cellranger-arc
written by Wu-Sheng Zhang 1
0 votes
2 replies
1.0K views
Merge Seurat objects
seurat merge single-cell
updated by Ram 4.5K • | written by biotrekker 11
0 votes
0 replies
697 views
News: Online Course: Network Analysis in R (May 5-8)
r networkanalyis tidyverse
written by Physalia-courses 281
0 votes
1 reply
879 views
News: Short Survey on Genomic Data Management & Analysis Workflows
analysis genomics
updated by Jeremy Leipzig 2.3K • | written by QMS 0
0 votes
1 reply
979 views
Motif enrichment across super-enhancer regions
motif homer enrichment
updated by rfran010 174 • | written by sk_24 0
0 votes
0 replies
745 views
JASPAR Database
jaspar homer
written by sk_24 0
1 vote
4 replies
1.9K views
How to perform Linkage Disequilibrium (LD) analysis in INDELS
snps plink linkage disequilibrium haploview
updated by Mwangana 0 • | written by Ant 5
0 votes
0 replies
531 views
Spatt2.1 a mirMap dependency, anyone know where I can get it?
mirmap dependency tarball
written by RNAseqer 30
0 votes
0 replies
769 views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
written by Mark 6
0 votes
1 reply
1.2K views
Why are phenotype values missing in PLINK analysis despite no NA values in the input?
plink prs phs pgs snpanalysis
updated by chrchang523 1.1K • | written by comu 0
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