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2 votes
2 replies
1.8K views
Which zUMIs output to use for differential gene expression?
zumis rnaseq smartseq3 single-cell
updated by dsull dsull • written by firestar firestar
0 votes
1 reply
932 views
build a diploid reference using cactus-pangenome pipeline
cactus pangenome diploid graph vg
updated by Dunois • Dunois • written by lucianocalderon • lucianocalderon
1 vote
0 replies
1.2K views
VEP doesn't count CADD
cadd vep annotation
written by balanannie • balanannie
6 votes
9 replies
7.6K views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
diffbind chip-seq deeptools visualization atac-seq
updated by lijiangres • lijiangres • written by Rory Stark Rory Stark
0 votes
1 reply
931 views
Per tile sequence fails after trimming
fastqc wes sequencing
updated by GenoMax GenoMax • written by ijarne • ijarne
0 votes
0 replies
680 views
Pipelines/Tools for cleaning UK Biobank data?
ukbiobank rap
written by Christian • Christian
0 votes
0 replies
779 views
Key error when using prepDE.py
python prepde stringtie keyerror
updated by WouterDeCoster WouterDeCoster • written by mohamadelian1996 • mohamadelian1996
0 votes
2 replies
1.3K views
Scdblfinder issue
r scdblfinder
updated by Ram Ram • written by rahma.khoualdia • rahma.khoualdia
0 votes
0 replies
764 views
Repeat Modeler Database Generation
repeat_modeler repeats fungi annotation genomes
written by SomeOne • SomeOne
0 votes
3 replies
1.1K views
Proteomics DEA
proteomics
updated by ATpoint ATpoint • written by frarodmar17 • frarodmar17
0 votes
0 replies
679 views
Difficulty Finding LRR SD and BAF Drift in GenomeStudio 2.0
array lrr baf genomestudio snp
written by Josephine H. • Josephine H.
0 votes
5 replies
3.6K views
ATAC-seq paired-end data peakcalling on MACS3 - BAMPE vs (BAM and shift with extsize)
macs3 bampe bam peakcalling atac-seq
updated by ATpoint ATpoint • written by Manko47 • Manko47
0 votes
1 reply
672 views
LH Sequencing Machine?
fastq
updated by GenoMax GenoMax • written by andrebolerbarros • andrebolerbarros
2 votes
6 replies
1.7K views
High memory sorting of kmers - best way to use sort
uniq linux sort kmers
updated by Alex Reynolds Alex Reynolds • written by r.ackbersingh • r.ackbersingh
0 votes
0 replies
655 views
News: Bayesian Data Analysis in R – Online Course (March 3-7)
r regressionmodeling statistics byesian
written by Physalia-courses Physalia-courses
0 votes
0 replies
537 views
Age covariate in GWAS
gwas
written by aaaniich • aaaniich
1 vote
8 replies
2.4K views
How well was the rRNA depletion for RNA-Seq experiments
contamination star rrna bbduk ribodetector
updated by GenoMax GenoMax • written by gogeni5529 • gogeni5529
0 votes
0 replies
714 views
News: Introduction to Machine Learning with R - online, March 3–7
r machine-learning omics genomics
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
1.7K views
Job: 2025 Summer Internship Opportunity in Computational Biology
intern
written by Shicheng Guo Shicheng Guo
0 votes
5 replies
2.2K views
Tools for fasterq file?
trimming
updated by AB AB • written by shinyjj • shinyjj
0 votes
9 replies
2.9K views
How to convert fasterq File into fastq files ?
fastq fasterq
updated by AB AB • written by NikhilP • NikhilP
0 votes
5 replies
1.2K views
How to extract DEGs from GEO database
extract degs
written by harrydo1892 • harrydo1892
1 vote
5 replies
1.2K views
In silico prediction if a phage can invade a bacterium
phage bacterium
written by A_heath • A_heath
0 votes
4 replies
4.5K views
BEAST and BEAGLE installed using conda environment, how to connect?
beast beauti
updated by sbrobeson • sbrobeson • written by kabir.deb • kabir.deb
0 votes
4 replies
1.4K views
Dimensionality reduction using RNA and protein expression
dimensionality-reduction rna-seq spatial
written by noodlejackson • noodlejackson
0 votes
2 replies
1.7K views
java out of memory error through beagle for imputation
beagle imputation java
updated by Ram Ram • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.5K views
BioPython load/save from SnapGene
biopython
written by tada • tada
2 votes
1 reply
26K views
Herald: The Biostar Herald for Monday, February 10, 2025
herald
updated by Bastien Hervé Bastien Hervé • written by Biostar Biostar
0 votes
1 reply
936 views
Get bond angles for nucleotides in pdb/cif structure file
cif cryoem pymol pdb structure
updated by dthorbur dthorbur • written by noodle noodle
0 votes
7 replies
1.4K views
merging .fastq.gz files results in corrupted files
corrupt gzip
written by rDNA • rDNA
0 votes
1 reply
782 views
Installing VEP for a Specific Chromosome (e.g., Chromosome 1) is not possible??
vep
updated by dthorbur dthorbur • written by Manuel • Manuel
0 votes
3 replies
1.2K views
Blast+ remote search for refseq reference genome
api refseq
updated by GenoMax GenoMax • written by Chiranth • Chiranth
0 votes
1 reply
790 views
Finding target for the biologically active compound
target-prediction
updated by dthorbur dthorbur • written by Pragya • Pragya
0 votes
3 replies
1.4K views
single-cell transcriptomics and bulk proteomics data integration
integration omics data
updated by AB AB • written by frarodmar17 • frarodmar17
0 votes
3 replies
1.2K views
Split genotypes in VCF file
vcf genotype dipcall
written by Biomonika (Noolean) Biomonika (Noolean)
0 votes
2 replies
769 views
clinker, a gene cluster visualization tool, crashed its online site
cluster gene
updated by ATpoint ATpoint • written by yinfang • yinfang
1 vote
2 replies
1.3K views
Using limma on a very low amount of genes
de-analysis limma
updated by colindaven colindaven • written by ijarne • ijarne
1 vote
2 replies
1.6K views
Snakemake version 8.27.1 on LSF cluster
metagenomics snakemake shotgun kraken2
updated by DBScan • DBScan • written by John • John
1 vote
3 replies
1.2K views
Bcftools extracting list of markers by chr and pos
bcftools
updated by Ram Ram • written by am29 • am29
0 votes
1 reply
572 views
differential gene expression in male and female samples
clcworkbench rnaseq
updated by ATpoint ATpoint • written by BioS • BioS
0 votes
0 replies
673 views
News: Online Course: Machine Learning Methods for Longitudinal Data with Python
longitudinal-data machine-learning deep-learning omics
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
881 views
Issue with Converting Excel Data to JSON
python classifier json machine-learning
updated by natasha.sernova natasha.sernova • written by Cake Day • Cake Day
0 votes
4 replies
1.2K views
Nanopore DRS data
m6a polya-tail drs nanopore
updated by GenoMax GenoMax • written by baibhu1234 • baibhu1234
0 votes
1 reply
917 views
Figures and plots for integration of ATAC and RNA seq data
atac-seq rna-seq
updated by jared.andrews07 jared.andrews07 • written by SpartanII • SpartanII
0 votes
1 reply
929 views
Issue with picard index in my one chr reference fasta file
samtofastq
written by Manuel • Manuel
0 votes
0 replies
615 views
News: course: Generalised Linear Models in R - Online, 24–28 February.
r generalised-linear-models glm
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
768 views
News: Seafood Genomics course - Online, February 25-28
qpcr genomic-traceability nanopore seafood-genomics
updated by Jeremy Leipzig Jeremy Leipzig • written by Physalia-courses Physalia-courses
0 votes
8 replies
1.7K views
Bowtie2 keeps exiting with "Error reading _plen[] array:"
bowtie2
updated by GenoMax GenoMax • written by biobaker • biobaker
0 votes
2 replies
1.5K views
How to Generate tissue_lowres_image.png from tissue_hires_image.png for spatial transcriptomics?
seurat spatial-transcriptomics
updated by Ram Ram • written by Genomancer • Genomancer
0 votes
0 replies
1.2K views
Job: Ad Astra Fellow – Assistant Professor of Artificial Intelligence in Medical Data Analytics
data-analytics assistant-professor medicine ai
written by Colm • Colm
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