This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
1.2K views
How to predict targets of miRNAs with indels in the seed region?
seed indels targets mirna
updated by ATpoint ATpoint • written by jhonatan.henrique • jhonatan.henrique
0 votes
2 replies
2.3K views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 17-19, 2025 in Berlin, Germany)
transcriptomics scrnaseq singlecell
written by ecSeq Bioinformatics • ecSeq Bioinformatics
1 vote
6 replies
4.7K views
How To Retrieve The Rna Type From A Pdb File?
rna pdb
updated by Eugene F. Baulin • Eugene F. Baulin • written by Noam N. Kremen • Noam N. Kremen
0 votes
1 reply
1.3K views
How to Analyze 10x Genomics Data with Full-Length R1 and R2 (100bp Each)?
10x-genomics umi single-cell rna-seq cellranger
updated by GenoMax GenoMax • written by zbidav • zbidav
0 votes
0 replies
516 views
Mapping OMIM IDs (for diseases) to MeSH IDs
phenotype ontology disease mesh omim
written by singhankit973 • singhankit973
0 votes
3 replies
2.0K views
Gini Coefficient and Lorenz curve to measure uniformity of coverage
gini lorenz curve coverage uniformity
updated by abascalfederico abascalfederico • written by am • am
0 votes
6 replies
2.3K views
DESeq2 for multiple groups
usegalaxy limma voom deseq2
written by banaalkhayrat123 • banaalkhayrat123
0 votes
2 replies
1.2K views
Bowtie index size / richness matters ?
bowtie
written by maschi88 • maschi88
0 votes
0 replies
776 views
juicer_tools for analyzing Hi-C data
juicer_tools
written by Bioinformatics_16 • Bioinformatics_16
0 votes
1 reply
973 views
Limma Voom
differential analysis
updated by ATpoint ATpoint • written by maryak • maryak
0 votes
0 replies
737 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study: Application in Bone Regeneration
multi-omics single-cell
written by Novogene • Novogene
0 votes
1 reply
680 views
SNP density visualization with circos in galaxy
visualization circos
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ag18090 • ag18090
0 votes
2 replies
1.3K views
Unusual File Count in 10x scMultiome Data for Cell Ranger ARC Processing
scmultiome 10x fastq human-cell-atlas cellranger-arc
written by Wu-Sheng Zhang • Wu-Sheng Zhang
0 votes
2 replies
1.0K views
Merge Seurat objects
seurat merge single-cell
updated by Ram Ram • written by biotrekker • biotrekker
0 votes
0 replies
685 views
News: Online Course: Network Analysis in R (May 5-8)
r networkanalyis tidyverse
written by Physalia-courses Physalia-courses
0 votes
1 reply
862 views
News: Short Survey on Genomic Data Management & Analysis Workflows
analysis genomics
updated by Jeremy Leipzig Jeremy Leipzig • written by QMS • QMS
0 votes
1 reply
959 views
Motif enrichment across super-enhancer regions
motif homer enrichment
updated by rfran010 • rfran010 • written by sk_24 • sk_24
0 votes
0 replies
719 views
JASPAR Database
jaspar homer
written by sk_24 • sk_24
1 vote
4 replies
1.8K views
How to perform Linkage Disequilibrium (LD) analysis in INDELS
snps plink linkage disequilibrium haploview
updated by Mwangana • Mwangana • written by Ant • Ant
0 votes
0 replies
527 views
Spatt2.1 a mirMap dependency, anyone know where I can get it?
mirmap dependency tarball
written by RNAseqer RNAseqer
0 votes
0 replies
763 views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
written by Mark • Mark
0 votes
1 reply
1.2K views
Why are phenotype values missing in PLINK analysis despite no NA values in the input?
plink prs phs pgs snpanalysis
updated by chrchang523 chrchang523 • written by comu • comu
0 votes
2 replies
1.2K views
Should I not have any adapters after trimming?
rna-seq
updated by swbarnes2 swbarnes2 • written by bioinfo • bioinfo
0 votes
6 replies
2.0K views
Incorrect gene naming (SYMBOL)
gene-annotation
updated by Ram Ram • written by Biomed-jeh • Biomed-jeh
0 votes
1 reply
3.6K views
Problem after subset of single cell integrated dataset in seurat using sctransform
seurat integration scrnaseq sctransform subset
written by NGS_enthusiast • NGS_enthusiast
1 vote
6 replies
2.2K views
Why do people say it doesn't matter whether you run unassembled or assembled reads through Kraken?
assembly unassembled-reads kraken
written by trkfs • trkfs
0 votes
5 replies
4.3K views
Best way to provide sequences to Local Colabfold to not overload their mmseq2 server
local colabfold
updated by dthorbur dthorbur • written by myoui3122010 • myoui3122010
1 vote
9 replies
6.7K views
Preventing Conda/Mamba from accessing Anaconda repos when institution blocks them
conda mamba repos miniforge channels
updated by Jesse • Jesse • written by kalavattam • kalavattam
1 vote
1 reply
1.0K views
GO Analysis Combine or Separate DEGs
clusterprofiler go
updated by mark.ziemann mark.ziemann • written by Koki • Koki
1 vote
1 reply
1.0K views
scType on Xenium Spatial Transcriptomics
spatial xenium sctype
updated by geno89 • geno89 • written by Emma Jayne • Emma Jayne
0 votes
0 replies
713 views
How to extract the components of a cluster after pheatmap
heatmap export cluster
written by Luiza • Luiza
0 votes
1 reply
2.2K views
Interpretation of MSMC2/PSMC/betaPSMC/ngsPSMC
demography psmc msmc
updated by csarabia • csarabia • written by vap768 • vap768
0 votes
3 replies
1.5K views
Metagenomic binnig step
binnig tools metagenomics
updated by Mensur Dlakic Mensur Dlakic • written by m90 • m90
0 votes
1 reply
907 views
Tool to phase genotyped large SV from short-read data?
sv structural variant short-reads haplotype phasing
updated by Pierre Lindenbaum Pierre Lindenbaum • written by afurches • afurches
0 votes
0 replies
531 views
Normalisation for sample splice junction profiles
splicing normalisation rnaseq
written by coolmattmonkey • coolmattmonkey
0 votes
0 replies
591 views
Calculate base pair probability differences between Wild type and mutant sequences
probabilities rnaplfold rnafold basepair
written by RK • RK
0 votes
1 reply
863 views
What is indicated by the red dotted lines in the `tiny_10x_pbmc.pdf` out put from `cellbender remove-background`
remove-background cellbender
updated by Bastien Hervé Bastien Hervé • written by joshua.theisen • joshua.theisen
0 votes
4 replies
1.6K views
Parameters for annotation with maker
maker masking plant annotation
written by san96 • san96
0 votes
3 replies
1.3K views
Extracting Sequences from a FASTA File Using Exon Coordinates from a GTF File
gtf fasta
updated by colindaven colindaven • written by Milica • Milica
0 votes
2 replies
845 views
Low Read Mapping for Differentially Expressed Genes in 3' RNA-seq Analysis
gene-expression single-end rna-seq
updated by Ram Ram • written by Emy Alade • Emy Alade
0 votes
3 replies
1.1K views
mapDamage error
mapdamage 1000genomes
written by anna.utili • anna.utili
0 votes
0 replies
721 views
News: Online Course: Flow Cytometry Data Analysis with R/Bioconductor (17–20 March 2025)
r bioconductor flow-cytometry cancer-genomics
written by Physalia-courses Physalia-courses
0 votes
1 reply
1.5K views
Average length of mRNA on NCBI annotation seems too high
mrna
updated by lieven.sterck lieven.sterck • written by yh1126 • yh1126
0 votes
0 replies
717 views
How to normalize qPCR results for covariates like cell type markers
normalization qpcr rna-seq
written by Sara • Sara
0 votes
4 replies
1.7K views
Proteomics Data Analysis
proteomics
updated by ATpoint ATpoint • written by frarodmar17 • frarodmar17
0 votes
0 replies
574 views
Demultiplexing asymmetrically barcoded reads from multiplex amplicon nanopore sequencing
ont demultiplex
written by michael.flower.14 • michael.flower.14
0 votes
8 replies
2.5K views
Regex in umi-tools doesn't identify pattern in non-beginning positions
whitelist umi-tools umi umi-tools umi-tools
updated by i.sudbery i.sudbery • written by kalaivani • kalaivani
0 votes
1 reply
976 views
GRCh38 reference paths in human pangenome
hprc grch38
updated by cmdcolin cmdcolin • written by Rugare • Rugare
0 votes
1 reply
1.0K views
Annotate WGS VCF with Allele Frequencies
snpeff vcf wgs allele
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Gabriel • Gabriel
0 votes
4 replies
1.6K views
dentifying tumor vs normal cells in spatial transcriptomics
seurat xenium spatial-transcriptomics
written by geno89 • geno89
Recent Votes
Recent Locations
Recent Replies