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biotrekker
biotrekker
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6.0 years ago
Last seen:
7 months ago
Location:
United States
Latest posts by user
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Comment: Comment: Should use Ambient RNA detection software for filtered_bc_matrices from Cell Ran
written by biotrekker • biotrekker
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2 replies
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Comment: Comment: Should use Ambient RNA detection software for filtered_bc_matrices from Cell Ran
written by biotrekker • biotrekker
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5 replies
1.4K views
Should use Ambient RNA detection software for filtered_bc_matrices from Cell Ranger for snRNAseq
ambient snrnaseq 10x cellranger
updated by carolofharvest • carolofharvest • written by biotrekker • biotrekker
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1 reply
1.1K views
Question about QC and scrublet
scrublet
updated by Arup Ghosh Arup Ghosh • written by biotrekker • biotrekker
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2 replies
2.0K views
scVI vs Harmony, which is better for cell type based clustering in brain tissue?
harmony scvi single cell
updated by ATpoint ATpoint • written by biotrekker • biotrekker
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1 reply
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
written by biotrekker • biotrekker
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1 reply
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
written by biotrekker • biotrekker
0 votes
1 reply
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
written by biotrekker • biotrekker
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0 replies
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Comment: Comment: Regarding the usage of raw vs filtered bc matrices
written by biotrekker • biotrekker
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11 replies
14K views
Regarding the usage of raw vs filtered bc matrices
10x ranger cell snrnaseq
updated by dsull dsull • written by biotrekker • biotrekker
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2 replies
1.0K views
Merge Seurat objects
seurat merge single-cell
updated by Ram Ram • written by biotrekker • biotrekker
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1 reply
841 views
How do I use msigdb to annotate the single cell data?
msigdb single-cell
updated by Ram Ram • written by biotrekker • biotrekker
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0 replies
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Comment: Comment: single nucleus RNA seq processing pipeline questions
written by biotrekker • biotrekker
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1 reply
971 views
I am getting an error with Kallisto Bustools wrapper (kb) command to create an index
kb kallisto bustools
updated by dsull dsull • written by biotrekker • biotrekker
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0 replies
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Comment: Comment: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
written by biotrekker • biotrekker
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2 replies
1.4K views
Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
snrnaseq kallisto 10x
written by biotrekker • biotrekker
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2 replies
1.2K views
single nucleus RNA seq processing pipeline questions
demultiplexing snrnaseq
written by biotrekker • biotrekker
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1 reply
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Comment: Comment: Can I go from kallisto results to SEURAT directly
written by biotrekker • biotrekker
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3 replies
1.3K views
Can I go from kallisto results to SEURAT directly
cell bustoolls kallisto single
updated by dsull dsull • written by biotrekker • biotrekker
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1 reply
799 views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated by Pierre Lindenbaum Pierre Lindenbaum • written by biotrekker • biotrekker
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