Merge Seurat objects
Hi,
I want to merge 123 seurat objects in R, I am running into issues with memory, how do I do this?
seurat
merge
single-cell
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Ram
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biotrekker •
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Could you please put effort and edit this poor question. It lacks a proper title and text body, any code and your hardware specs. Thank you.
I did some cleanup; OP needs to a much better job