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shinyjj
shinyjj
Reputation:
70 (New)
Joined:
4.4 years ago
Last seen:
2.1 years ago
Location:
United States

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Latest posts by user
0 votes
0 replies
589 views
Strand inconsistency between Long read tool and minimap2?
minimap2
written by shinyjj 7
0 votes
2 replies
0 views
Comment: Comment: How to check coverage in bam file?
written by shinyjj 7
0 votes
7 replies
2.6K views
How to check coverage in bam file?
bam
updated by cmdcolin 448 • | written by shinyjj 7
0 votes
3 replies
1.4K views
3 samples (control) vs 3 samples (condition) 100M coverage data
reads
updated by Kevin Blighe 9.0K • | written by shinyjj 7
0 votes
1 reply
1.2K views
Quality check in long read (ONT, PacBio) bam files
qc bam minimap2
updated by GenoMax 16K • | written by shinyjj 7
0 votes
0 replies
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj 7
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj 7
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj 7
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj 7
0 votes
8 replies
2.6K views
minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
minimap2
written by shinyjj 7
0 votes
2 replies
942 views
Question regarding transcript quantification with hybrid seq
short-read salmon long-read hybrid-seq
updated by jared.andrews07 1.9K • | written by shinyjj 7
0 votes
0 replies
0 views
Comment: Comment: Does salmon work with combined short and long read bam file?
written by shinyjj 7
0 votes
5 replies
2.3K views
Does salmon work with combined short and long read bam file?
salmon
updated by callumjcparr 10 • | written by shinyjj 7
0 votes
1 reply
0 views
Comment: Comment: salmon with long reads
written by shinyjj 7
1 vote
3 replies
3.1K views
salmon with long reads
salmon
updated by Rob 747 • | written by shinyjj 7
0 votes
2 replies
1.7K views
Visualize raw rna fastq file and aligned bam file
bam genome fastq browser
updated by Alex Reynolds 3.6K • | written by shinyjj 7
0 votes
0 replies
874 views
Count hexamer bias from pair end short read data
short deseq2 bias read hexamer
updated by rpolicastro 1.3K • | written by shinyjj 7
0 votes
1 reply
0 views
Comment: Comment: rna long read length distibution
written by shinyjj 7
0 votes
3 replies
1.9K views
rna long read length distibution
long-read
updated by Ram 4.5K • | written by shinyjj 7
0 votes
1 reply
2.1K views
Question for 3 prime bias in rna short read and long read (illumina, ont, pacbio)
rna-seq short-read long-read
updated by Ram 4.5K • | written by shinyjj 7
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