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shinyjj
shinyjj
Reputation:
70
Joined:
4.2 years ago
Last seen:
1.9 years ago
Location:
United States

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Latest posts by user
0 votes
0 replies
563 views
Strand inconsistency between Long read tool and minimap2?
minimap2
written by shinyjj • shinyjj
0 votes
2 replies
0 views
Comment: Comment: How to check coverage in bam file?
written by shinyjj • shinyjj
0 votes
7 replies
2.5K views
How to check coverage in bam file?
bam
updated by cmdcolin cmdcolin • written by shinyjj • shinyjj
0 votes
3 replies
1.3K views
3 samples (control) vs 3 samples (condition) 100M coverage data
reads
updated by Kevin Blighe Kevin Blighe • written by shinyjj • shinyjj
0 votes
1 reply
1.1K views
Quality check in long read (ONT, PacBio) bam files
qc bam minimap2
updated by GenoMax GenoMax • written by shinyjj • shinyjj
0 votes
0 replies
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj • shinyjj
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj • shinyjj
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj • shinyjj
0 votes
1 reply
0 views
Comment: Comment: minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
written by shinyjj • shinyjj
0 votes
8 replies
2.6K views
minimap2 for polyA site sequenced with long read data (both cDNA ONT, PacBio)
minimap2
written by shinyjj • shinyjj
0 votes
2 replies
910 views
Question regarding transcript quantification with hybrid seq
short-read salmon long-read hybrid-seq
updated by jared.andrews07 jared.andrews07 • written by shinyjj • shinyjj
0 votes
0 replies
0 views
Comment: Comment: Does salmon work with combined short and long read bam file?
written by shinyjj • shinyjj
0 votes
5 replies
2.3K views
Does salmon work with combined short and long read bam file?
salmon
updated by callumjcparr • callumjcparr • written by shinyjj • shinyjj
0 votes
1 reply
0 views
Comment: Comment: salmon with long reads
written by shinyjj • shinyjj
1 vote
3 replies
3.1K views
salmon with long reads
salmon
updated by Rob Rob • written by shinyjj • shinyjj
0 votes
2 replies
1.6K views
Visualize raw rna fastq file and aligned bam file
bam genome fastq browser
updated by Alex Reynolds Alex Reynolds • written by shinyjj • shinyjj
0 votes
0 replies
845 views
Count hexamer bias from pair end short read data
short deseq2 bias read hexamer
updated by rpolicastro rpolicastro • written by shinyjj • shinyjj
0 votes
1 reply
0 views
Comment: Comment: rna long read length distibution
written by shinyjj • shinyjj
0 votes
3 replies
1.9K views
rna long read length distibution
long-read
updated by Ram Ram • written by shinyjj • shinyjj
0 votes
1 reply
2.0K views
Question for 3 prime bias in rna short read and long read (illumina, ont, pacbio)
rna-seq short-read long-read
updated by Ram Ram • written by shinyjj • shinyjj
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