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rls_08
rls_08
Reputation:
40
Joined:
7.6 years ago
Last seen:
1.3 years ago
Location:
United States
Latest posts by user
0 votes
1 reply
1.3K views
merging .cool files of replicates
cool interaction-matrix hic
updated by kalavattam • kalavattam • written by rls_08 • rls_08
0 votes
0 replies
0 views
Answer: Answer: Check the normalizations available in a hic file?
written by rls_08 • rls_08
0 votes
0 replies
0 views
Comment: Comment: Check the normalizations available in a hic file?
written by rls_08 • rls_08
0 votes
4 replies
2.0K views
Check the normalizations available in a hic file?
juicer-tools hic-pro hic
written by rls_08 • rls_08
0 votes
2 replies
1.3K views
Cluster regions based on similar/dissimilar ChIP-seq signal profile across the whole region and not just overall mean signal.
clustering chip-seq deeptools
updated by Ming Tommy Tang Ming Tommy Tang • written by rls_08 • rls_08
0 votes
0 replies
0 views
Comment: Comment: Statistical tests for NGS profile/enrichment plots
written by rls_08 • rls_08
0 votes
0 replies
0 views
Comment: Comment: Merge two bigwig(+/- strand) files from RNA-seq
written by rls_08 • rls_08
0 votes
0 replies
856 views
PANTHER functional classification
panther gene-ontology
updated by Ram Ram • written by rls_08 • rls_08
0 votes
1 reply
0 views
Comment: Comment: Calling large domains of signal enrichment (broad peaks) from log2,input normali
written by rls_08 • rls_08
0 votes
3 replies
1.7K views
Calling large domains of signal enrichment (broad peaks) from log2,input normalized ChIP-seq data
chip-seq peak-caller normalization broad-domains
updated by rfran010 • rfran010 • written by rls_08 • rls_08
0 votes
1 reply
1.2K views
Reducing the size of raw sequencing data in fastq format by using a simplified quality score
fastq compression
updated by ATpoint ATpoint • written by rls_08 • rls_08
0 votes
0 replies
664 views
Getting an "double free or corruption (out)" error when running wigToBigWig
wigtobigwig
written by rls_08 • rls_08
0 votes
0 replies
846 views
Any straightforward way to re-bin a bigWig file?
bigwig
written by rls_08 • rls_08
0 votes
0 replies
0 views
Comment: Comment: smoothing or binning bigWig file
written by rls_08 • rls_08
0 votes
2 replies
1.0K views
in an RNA-seq experiment, what threshold would you use to define a set of expressed or active genes in a cell line?
rna-seq
updated by i.sudbery i.sudbery • written by rls_08 • rls_08
0 votes
0 replies
614 views
displaying results of different RNA-seq projects in R shiny
rna-seq shiny r
written by rls_08 • rls_08
1 vote
0 replies
0 views
Comment: C: smoothing or binning bigWig file
written by rls_08 • rls_08
0 votes
0 replies
0 views
Comment: C: how to merge overlapping intervals in a bedgraph file
written by rls_08 • rls_08
1 vote
0 replies
1.9K views
obtaining mean contact/interaction frequency of a given 2D genomic region (loops from from bedpe file) from a hic matrix
hic hi-c bedpe matrix r
written by rls_08 • rls_08
0 votes
1 reply
0 views
Comment: A: [ChIP-seq. signal plot] How to align the based line of different samples?
written by rls_08 • rls_08
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