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Forum: Preparation needed to get into Bioinformatics

So, I'm an undergraduate student majoring in Computer Science and Engineering. I'm on my senior year and expected to graduate this June. Due to several conditions, I need to graduate one year late. I want to pursue master degree in computational biology, because I just love biology so much. I plan to take classes on Biology department that can help me get into Bioinformatics field. I will use that one year to take the classes. So, which subject that I need to take to prepare me into the Bioinformatics field?

education

This question was also asked on bioinformatics SE: https://bioinformatics.stackexchange.com/questions/23210/preparation-needed-to-get-into-bioinformatic-field

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3 answers

This question (and variants very similar to it) have been asked many times on this site. I'd recommend searching for some of those questions.

In short, a solid foundation of molecular biology, genetics, and experimental design will be helpful pretty much regardless of what you do later. A basic grasp of stats will not go wasted either, though most Masters programs should cover that as well.

So if you don't have of a good understanding of what a gene, DNA, RNA, and proteins really are, courses that teach that will be very useful.

I think those considering a career in bioinformatics may be helped by making a choice between these two options:

  • The analysis of biological molecules using computers and statistical techniques
  • The science of developing and utilizing computer databases and algorithms to accelerate and enhance biological research

If the second option is more appealing, a career in computational biology, or a supporting career in bioinformatics, may be better choices.

There are many definitions of bioinformatics, and I recommend the following paper to my students:

http://archive.gersteinlab.org/papers/e-print/whatis-mim/text.pdf

A short version of their definition would be something like this: Bioinformatics studies macromolecules by applying “informatics” techniques to understand and organize the information on a large scale.

A key thing here is that bioinformatics works with biological macromolecules, so understanding them is essential. At a minimum that means a couple of biochemistry and molecular biology classes. Understanding how these molecules work together and how they are regulated requires a molecular genetic class. Beyond that we get into specifics depending on individual interests. To study these molecules directly, one would probably need a course in macromolecular methods. Someone studying proteins will probably need a course in protein structure. If a person has no interest in bench work, getting stronger foundation in statistics and algorithms could be beneficial. A proper bioinformatics course would probably be useful to tie everything together.

If you can, find a professor to do bioinformatics research with. That’s the best way to learn in my opinion.

I agree that's the best way, but that route has 3 important requirements: a professor who 1) knows bioinformatics; 2) is willing to teach biology and bioinformatics to a novice student; 3) is willing to accept that they may not get anything out of this work other than helping a student gain knowledge.

I don't know many people locally who fulfil criterion #1, and obviously that number goes down when applying the other two criteria.

I think you also imply that this is good in addition to coursework, or as a backup plan,.

yes, i guess it depends on what institution the original poster is currently at. Much easier to find such a professor at some places vs. others (I was privileged to be at such a place for my studies). But, of course, this will be in addition to coursework; almost all BS or MS programs require coursework anyways.

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