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bertb
bertb
Reputation:
20
Joined:
7.7 years ago
Last seen:
1.5 years ago
Location:
Canada
Latest posts by user
0 votes
2 replies
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Comment: Comment: bcftools not calling variants that appear high quality
written by bertb • bertb
0 votes
4 replies
1.7K views
bcftools not calling variants that appear high quality
bcftools dnaseq snps
updated by Pierre Lindenbaum Pierre Lindenbaum • written by bertb • bertb
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0 replies
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Comment: Comment: How to compare peak profiles for a subset of ChIPseq genes
written by bertb • bertb
0 votes
2 replies
1.2K views
How to compare peak profiles for a subset of ChIPseq genes
diffbind composite-peak-profile chip-seq
written by bertb • bertb
0 votes
1 reply
1.0K views
ChIPQC read depth doesn't match BAM files
chipseq chipqc
updated by Rory Stark Rory Stark • written by bertb • bertb
0 votes
1 reply
2.3K views
DiffBind - Comparing normalization/background methods - how to create a heatmap (as in 7.5)?
diffbind normalization chipseq
updated by Rory Stark Rory Stark • written by bertb • bertb
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0 replies
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Comment: Comment: help for dba.count settings for RNAPII-ChIP using GRanges peakset
written by bertb • bertb
0 votes
2 replies
1.6K views
help for dba.count settings for RNAPII-ChIP using GRanges peakset
diffbind chipseq
written by bertb • bertb
0 votes
0 replies
0 views
Comment: Comment: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
written by bertb • bertb
0 votes
2 replies
2.9K views
Problems with dba.analyze in DiffBind - are blacklists/greylists required to obtain DESeq sites?
blacklist dba.analyze chipseq greylist diffbind
written by bertb • bertb
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0 replies
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Comment: Comment: DiffBind normalization returned NULL
written by bertb • bertb
1 vote
2 replies
1.9K views
DiffBind normalization returned NULL
diffbind dba.normalize normalization chipseq
written by bertb • bertb
0 votes
1 reply
0 views
Comment: C: error when running NGS tools in bash script
written by bertb • bertb
0 votes
4 replies
1.8K views
error when running NGS tools in bash script
software error automation scripting
written by bertb • bertb
0 votes
0 replies
1.1K views
bam_stat.py and featureCounts stats don't seem to make sense (to me)
rna-seq alignment
written by bertb • bertb
0 votes
0 replies
0 views
Comment: C: How to filter out chromosome regions from a .bam file
written by bertb • bertb
0 votes
4 replies
5.3K views
How to filter out chromosome regions from a .bam file
rna-seq alignment
updated by John Marshall John Marshall • written by bertb • bertb
0 votes
0 replies
997 views
How to unique mappers become concordant pairs aligned >1 times
rna-seq alignment
written by bertb • bertb
0 votes
0 replies
0 views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
written by bertb • bertb
0 votes
1 reply
0 views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
written by bertb • bertb
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