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Brian Bushnell
Brian Bushnell
Role:
Moderator
Reputation:
20,340
Joined:
11.7 years ago
Last seen:
2 months ago
Location:
Walnut Creek, USA

I like to program in Java.

Latest posts by user
1 vote
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Answer: Answer: FindSSU — fast 16S/18S classification, comparison, and sequence retrieval for 27
written by Brian Bushnell Brian Bushnell
7 votes
2 replies
289 views
Tool: FindSSU — fast 16S/18S classification, comparison, and sequence retrieval for 276,000 organisms via website, API, or command-line tool
ssu 16s bbtools taxonomy
updated by Dunois • Dunois • written by Brian Bushnell Brian Bushnell
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
written by Brian Bushnell Brian Bushnell
1 vote
1 reply
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Answer: Answer: bbduk.sh trimming to BAM output file
written by Brian Bushnell Brian Bushnell
4 votes
0 replies
767 views
Tool: High Resolution Imaging of Illumina Flowcell Surface Properties
illumina novaseqx bbtools
written by Brian Bushnell Brian Bushnell
1 vote
0 replies
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Comment: Comment: Using BBtools to remove polyGs in Illumina data
written by Brian Bushnell Brian Bushnell
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Answer: Answer: Integration of paired and single-end SRA
written by Brian Bushnell Brian Bushnell
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Comment: Comment: Find all sequences with adapters without trimming them off
written by Brian Bushnell Brian Bushnell
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
written by Brian Bushnell Brian Bushnell
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
written by Brian Bushnell Brian Bushnell
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
written by Brian Bushnell Brian Bushnell
1 vote
1 reply
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Answer: Answer: KeepBothReads in Trimmomatic
written by Brian Bushnell Brian Bushnell
2 votes
0 replies
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Answer: Answer: How can you determine the mutation rate of mitochondrial DNA for your (Grasshopp
written by Brian Bushnell Brian Bushnell
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
written by Brian Bushnell Brian Bushnell
1 vote
1 reply
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Comment: Comment: Awesome awesomeness bioinformatics
written by Brian Bushnell Brian Bushnell
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Answer: Answer: Trimmomatic or Cutadapt not Trimming my Adapters even though I see them clearly
written by Brian Bushnell Brian Bushnell
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Comment: Comment: Aedes vexans RNA-seq de novo assembly
written by Brian Bushnell Brian Bushnell
1 vote
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Answer: Answer: Understanding bedtools coverage for datasets with in-dels.
written by Brian Bushnell Brian Bushnell
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Comment: Comment: Drawing circular and linear mitochondrial genome diagrams
written by Brian Bushnell Brian Bushnell
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Comment: Comment: High Detection of Duplication in RNAseq dataset
written by Brian Bushnell Brian Bushnell
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