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1 vote
13 replies
23K views
log2 fold change in RNA-seq analysis
fold log2 change
updated by May Ling • May Ling • written by wmsalsah • wmsalsah
0 votes
1 reply
827 views
GWAS Phenotypes
gwas
updated by 韩雨 • 韩雨 • written by Onyeubani • Onyeubani
0 votes
4 replies
12K views
Classic threshold for log2 fold change in RNA-seq experiment
rna-seq
updated by May Ling • May Ling • written by Mozart Mozart
1 vote
1 reply
937 views
Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Pooled with Hashtags
5inmuneprofiling nf-core scrnaseq cellranger-multi nextflow
updated by GenoMax GenoMax • written by azeu • azeu
0 votes
0 replies
417 views
Assigning Micro-C read pairs to nucleosomes called from MNase-seq data?
hi-c mnase-seq
written by Linus • Linus
1 vote
3 replies
16K views
Z score in RNAseq
rna-seq zscore
updated by SKY • SKY • written by rob.costa1234 rob.costa1234
0 votes
1 reply
590 views
Free AI for R programming
r
updated by Ram Ram • written by mohamadzare6022 • mohamadzare6022
1 vote
13 replies
8.0K views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
pc
updated by i.sudbery i.sudbery • written by Estevão • Estevão
0 votes
1 reply
763 views
Extracting haplotype-specific annotations from splicing graph
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Juhyun • Juhyun
0 votes
0 replies
622 views
Phyloseq returning black bars for plot_bar
phyloseq bioconductor r
written by Jacob • Jacob
1 vote
8 replies
3.2K views
Random Access remote BAM files
htslib bam
updated by a.penatauber • a.penatauber • written by Lucas R.F. • Lucas R.F.
0 votes
0 replies
453 views
Cancer vs Normal Cell Classification Based on SNVs
cancer
written by dglad • dglad
0 votes
4 replies
1.3K views
merge overlaps and remove non overlap genomic windows
bed intersection overlap
written by reza reza
0 votes
2 replies
1.2K views
Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
rnaseq
updated by GenoMax GenoMax • written by Fossil • Fossil
1 vote
2 replies
1.5K views
Construction of circos plot from WGS data
wgs circos
written by Anitha • Anitha
0 votes
3 replies
1.3K views
Trimmomatic running but files containing purged reads are empty
fastqc fastq trimmomatic
updated by GenoMax GenoMax • written by Wilber0x • Wilber0x
0 votes
0 replies
484 views
How to find nucleotide changes and the predicted effect when comparing two genomes
blast alignment
updated by Ram Ram • written by Melissa • Melissa
1 vote
3 replies
1.8K views
FastQC interpretation - 16S sequencing
interpretation amplicon fastqc 16s
updated by GenoMax GenoMax • written by Christopher • Christopher
0 votes
0 replies
749 views
Subset of ATAC-seq peaks has high variance
atac-seq edger r normalization
written by Tim • Tim
0 votes
6 replies
2.1K views
How to get the ratio of allele counts from GATK derived VCF file?
gatk vcf snp freebayes
written by anikcropscience • anikcropscience
0 votes
0 replies
554 views
KEGG pathway enrichment analysis in Zea mays with R
kegg zea-mays r
updated by Ram Ram • written by letizia.ottaviani • letizia.ottaviani
0 votes
6 replies
1.8K views
from CRAM to fastq
fastq wgs cram
updated by ATpoint ATpoint • written by machaalani29 • machaalani29
0 votes
0 replies
522 views
News: Bioinformatic Analysis of Transposable Elements course
genome-annotation te manual-curation transposable-elements
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
646 views
No output when converting transcript IDs to gene symbols
rna-seq
updated by Ram Ram • written by ashkan ashkan
2 votes
2 replies
1.7K views
vg autoindex seems stuck after a week of running
vg pangenome
written by StevieP • StevieP
0 votes
3 replies
1.7K views
Kraken2 Custom Database non-deterministic results
metagenomics kraken2
updated by colindaven colindaven • written by Bjorn • Bjorn
0 votes
1 reply
1.2K views
How to get 2 seurat objects into a DEseq
seurat deseq
updated by Ram Ram • written by He11oJe11o • He11oJe11o
0 votes
0 replies
652 views
Rescaling normalized enrichment score (NES)
heatmap
written by CTLong • CTLong
0 votes
3 replies
1.5K views
Splitting query fasta file for Diamond Blastp make the process faster?
diamond
written by kmat • kmat
0 votes
1 reply
746 views
Mapping difference with BWA
variant-calling samtools bam bwa genomics
updated by ATpoint ATpoint • written by rj.rezwan • rj.rezwan
0 votes
0 replies
542 views
Kegg Pathways to Circos
genomics kegg circos
written by dlera.lozano • dlera.lozano
0 votes
6 replies
2.8K views
Problem in getting geo file through GEOQUERY
geoquery geo
updated by Ram Ram • written by anasjamshed anasjamshed
0 votes
1 reply
1.1K views
Multi-ploid data in ANGSD and NGSadmix
ancestry diploid haploid admixture
updated by andersdetermig • andersdetermig • written by Christopher • Christopher
0 votes
2 replies
1.5K views
transanno liftvcf "Error: length of chromosome [chr] is not equal to length in chain file. Are you using correct reference?"
liftover transanno
written by ezz3 • ezz3
0 votes
10 replies
3.2K views
Add stats to the plot
r
written by G.S • G.S
0 votes
4 replies
1.3K views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
gatk unifiedgenotyper
written by shpak.max • shpak.max
0 votes
4 replies
1.6K views
Allele count of 2 for homoplasmic MT variants in VCF
variant-calling gatk vcf
written by Arton • Arton
0 votes
3 replies
1.5K views
downloading chemical database from ChEMBL
chembl pyrmd virtual-screening
updated by GenoMax GenoMax • written by s • s
0 votes
3 replies
1.4K views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated by GenoMax GenoMax • written by bioinfo • bioinfo
0 votes
2 replies
1.2K views
Multiplexing for pooled CRISPR screen sequencing
multiplex crispr-screen illumina
written by Tuấn Anh • Tuấn Anh
2 votes
4 replies
3.0K views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
written by Aspire Aspire
0 votes
4 replies
1.8K views
Functional enrichment analysis for unique gene IDs
rna-seq
written by Pegasus • Pegasus
0 votes
2 replies
1.0K views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
seurat scrna-seq single-cell
written by Shukai • Shukai
0 votes
3 replies
1.2K views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by mrk • mrk
0 votes
3 replies
2.0K views
z-score of gene set
z-score scrna gene-set
written by Hien • Hien
0 votes
2 replies
1.1K views
converting transcript IDs (Ensembl) to gene symbols in R
rna-seq
updated by GenoMax GenoMax • written by ashkan ashkan
0 votes
0 replies
617 views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics bacteria wgs amr resistome
updated by GenoMax GenoMax • written by LuciaNhu • LuciaNhu
0 votes
2 replies
996 views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast fasta vcf gene
updated by Ram Ram • written by Harshita • Harshita
3 votes
0 replies
746 views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftover atac-seq csaw
updated by Ram Ram • written by Rafael Soler • Rafael Soler
0 votes
0 replies
731 views
Job: PhD position for metagenomics analysis at the University of Udine
metagenomics
updated by Ram Ram • written by Fabio Marroni Fabio Marroni
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