This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
3.5K views
InferCNV results interpretation
cnv infercnv scrna-seq
updated by jared.andrews07 1.9K • | written by Yingying 6
0 votes
2 replies
1.2K views
Combining microarray, RNA Seq, whole & exome sequencing
microarray rna
updated by i.sudbery 2.3K • | written by Nona 9
1 vote
6 replies
2.6K views
PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while adj p < 0.05 does not.
rna-seq padj p-value
written by May Ling 1
0 votes
1 reply
826 views
Alternative Database for Somatic Indel Realignment (COSMIC Alternative)
cosmic
updated by DGTool 30 • | written by ManuelDB 11
0 votes
2 replies
2.3K views
Minimap2 chimeric reads
minimap2 chimeric-reads
updated by cmdcolin 448 • | written by Fadwa 1
0 votes
7 replies
1.9K views
small RNA-seq length distribution of 100nt?
small-rnaseq fastp mirnas
updated by GenoMax 16K • | written by karlaarz 12
0 votes
0 replies
465 views
Estimate/calculate power for two-sample Mendelian randomization?
mr
written by huynguyenacademia 0
1 vote
0 replies
787 views
Blog: Long-read single-cell Sequencing
rnaseq long-read single-cell scrna-seq transcriptomics
written by Gabby 2
0 votes
2 replies
1.1K views
TSS sites annotation for hg38
tss hg38 annotation
written by octpus616 14
0 votes
0 replies
416 views
kegg pathway analysis
metabolic-pathway gibbs-energy
updated by Ram 4.5K • | written by yuxiang 0
0 votes
2 replies
1.2K views
newbie question: why the length of adapter is not fixed?
library construction sequencing
written by Dora 1
0 votes
5 replies
1.5K views
CNVnator Installation
cnv cnvnator wgs
updated by Ram 4.5K • | written by Wasim 0
0 votes
2 replies
2.2K views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools gcs
updated by aw7 40 • | written by abhishekghadge 4
0 votes
7 replies
2.3K views
Can I assemble chloroplast genome of plants using SRA data from NCBI and I can publish it ?
chloroplast genome sra
updated by Istvan Albert 10K • | written by balajir24.smc 0
2 votes
1 reply
26K views
Herald: The Biostar Herald for Wednesday, May 29, 2024
herald
updated by LChart 518 • | written by Biostar 380
0 votes
1 reply
2.1K views
enrichGO function produces NULL object
enrichgo
updated by bk11 312 • | written by rykers 0
0 votes
2 replies
954 views
Forum: How Can BioJobs Lab Effectively Attract Top Talent and Employers in the Biotech Industry?
biotech
updated by pairedttest 4 • | written by Darren 0
0 votes
1 reply
2.0K views
vg call vs vg surject
vg variation graphs
updated by glenn.hickey 55 • | written by aliraza3119 0
1 vote
4 replies
4.5K views
How do I create a gff(3) file from a genebank file?
gff genebank
updated by Istvan Albert 10K • | written by torkel.loman 1
0 votes
0 replies
507 views
visualization of centromere
visualization centromere human
written by kidpopaye 0
0 votes
1 reply
1.3K views
Job: Seeking remote internship in genomic analyses
ngs genomics variant-calling
written by SlowSD 0
2 votes
9 replies
2.8K views
VG view and VG chunk failed when using SequenceTubeMap
vg vgteam
written by gforg34 2
0 votes
2 replies
1.7K views
cannot conda install macs3 on linux
atac macs3
written by QX 9
0 votes
6 replies
4.6K views
NCBI vs Ensembl - Ortholog genes Information
genomics orthologs ncbi ensembl
written by José 1
0 votes
2 replies
705 views
Chromosomal distribution of the trancscripts count
chrosome_location
updated by ATpoint 9.1K • | written by Varsha 0
0 votes
4 replies
1.3K views
How to Split FASTQ File by UMI Indices into Multiple Files
seqkit umi split fastq
updated by GenoMax 16K • | written by LDT 34
0 votes
1 reply
862 views
Alternatives RAST annotation
database alternative rast annotation
updated by GenoMax 16K • | written by emma.vankerckhove 0
0 votes
7 replies
2.2K views
Constructing single sequence genome assembly out of short reads
short reads assembly
written by Bushra Bibi 8
1 vote
13 replies
3.1K views
How do i calculate the mean of triplicates in a data.frame based on pattern?
tidyverse r
updated by gglim 22 • | written by Assa Yeroslaviz 197
0 votes
3 replies
1.3K views
RNA-Seq analysis
rna-seq
updated by Physalia-courses 281 • | written by zahrakhanyousufzai5 0
0 votes
5 replies
1.4K views
Filtering reads that map to both references
bwa insertion alignment reference
updated by Trivas 191 • | written by michael.flower.14 21
0 votes
0 replies
412 views
Results of NOT FOUND encountered when running SCENIC
scenic
written by smilewang997700 0
0 votes
1 reply
948 views
monocle3 dot plot by groups and each cell types
monocle3 r
updated by zx8754 1.2K • | written by sooni 2
0 votes
12 replies
4.3K views
Set the same Y scale for different plots
ggplot2 r
written by G.S 6
0 votes
1 reply
1.0K views
Intersection of multiple vcf files
isec vcf bcftools
updated by Jeremy Leipzig 2.3K • | written by avelarbio46 3
1 vote
3 replies
1.5K views
when I use htslib to write a bam. Error of "truncated file" shows by samtools
bam htslib
updated by GenoMax 16K • | written by Aaron 1
0 votes
0 replies
454 views
Using a within population reference genome - Recombination
relernn vcf popgen recombination
written by dylan 0
1 vote
1 reply
1.1K views
Why does WGCNA use weighted correlation instead of Pearson correlation?
wgcna
updated by allingt 4 • | written by remagen 1
0 votes
0 replies
497 views
reference geome gaf file obsolent GO replacement
gaf go
written by Nicolas 0
1 vote
1 reply
1.1K views
Can I count UMI-barcode combination without mapping?
hydrop protein umi umi-tools
updated by GenoMax 16K • | written by Assa Yeroslaviz 197
0 votes
2 replies
1.0K views
How do I check if a DNA sequence of a gene is supported by RNAseq data?
genetics rna-seq phase-variation alignment
written by Jack 0
1 vote
4 replies
4.8K views
Illumina EPIC v2 IlmnIDs and probe names
illumina epic epicv2
updated by Papyrus 310 • | written by christine.a.pedersen 2
0 votes
7 replies
4.6K views
Best practices in Fungal Genome Assembly
illumina assembly nanopore genome
updated by samuel.a.odonnell 86 • | written by SomeOne 33
0 votes
4 replies
1.7K views
Confirmation required on how DiffBind generates union of regions (min. 1bp overlap or gap)?
diffbind
written by Ian 614
1 vote
2 replies
1.5K views
Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scrnaseq single-cell seurat scanpy umi
written by ev97 4
0 votes
9 replies
6.4K views
Error with pheatmap - 'from' must be a finite number
pheatmap r deseq2
updated by zx8754 1.2K • | written by vmpsb 0
0 votes
7 replies
2.8K views
Z score
z-score
updated by ATpoint 9.1K • | written by SKY 6
0 votes
2 replies
1.2K views
Polygenic Risk Score calculation
snp polygene prs variants
written by ashaneev07 5
1 vote
0 replies
436 views
EXOME DEPTH - CNV
cnv
written by Neha 1
0 votes
5 replies
1.3K views
coding and non-coding region of the viral genome
viral-genome
updated by dthorbur 350 • | written by G.S 6
Recent Votes
Recent Locations
Recent Replies