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aw7
aw7
Reputation:
400
Joined:
6.6 years ago
Last seen:
1 month ago
Location:
United Kingdom

samtools developer working at the Wellcome Sanger Institute.

Latest posts by user
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Comment: Comment: HTSlib threads when ingesting large bgzipped FASTA
written by aw7 • aw7
2 votes
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Answer: Answer: Does sam 2048 flag discriminate secondary from supplementary alignments?
written by aw7 • aw7
1 vote
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Answer: Answer: samtools reheader error
written by aw7 • aw7
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Answer: Answer: samtools version 1.17 having difficulty parsing a filtering command. advice?
written by aw7 • aw7
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Comment: Comment: Guidance on Reference-Based Assembly and Variant Analysis of Exome Sequencing Da
written by aw7 • aw7
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Answer: Answer: samtools write-index
written by aw7 • aw7
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Comment: Comment: Using samtools with GCS (google cloud storage) on a docker container seems to gi
written by aw7 • aw7
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Answer: Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
written by aw7 • aw7
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Answer: Answer: Help interpreting Samtools Flagstat results
written by aw7 • aw7
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Answer: Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
written by aw7 • aw7
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Answer: Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
written by aw7 • aw7
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Comment: Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
written by aw7 • aw7
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Answer: Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
written by aw7 • aw7
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Comment: Comment: How is the format of the bed file for samtools ampliconclip
written by aw7 • aw7
5 votes
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Answer: Answer: samtools ampliconclip option --strand is not working?
written by aw7 • aw7
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Comment: Comment: How to get MD tag sequence of a read from a sam file given a bed file?
written by aw7 • aw7
4 votes
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Answer: Answer: What are bitsets in Samtools flagstat output?
written by aw7 • aw7
1 vote
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Comment: Comment: Edit and re-head BAM file
written by aw7 • aw7
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Comment: Comment: Sort BAM file by read mates
written by aw7 • aw7
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Comment: Comment: Samtools flagstat
written by aw7 • aw7
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