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0 votes
2 replies
978 views
dbNSFP4.7a database format to Annovar Format?
snp annovar ngs dbnsfp
updated by Ram 4.5K • | written by Clark_BioMorgan 5
1 vote
5 replies
1.8K views
Search within posts based on tags using the Biostars API
api meta
updated by Ram 4.5K • | written by Bálint 1
0 votes
0 replies
656 views
Funcotator gnomAD incoherent number of output fields
gatk gnomad funcotator
updated by Ram 4.5K • | written by jaime alvarez 3
0 votes
1 reply
914 views
Help with proteomics downstream analysis
mass-spectrometry proteomics
updated by Ram 4.5K • | written by Álvaro 0
0 votes
3 replies
1.6K views
How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
multi-omics cnv r
updated by Zhenyu Zhang 130 • | written by Ngrin 0
1 vote
0 replies
405 views
Calculating F_IS, F_IT on ancient DNA
adna
written by devenvyas 77
0 votes
0 replies
554 views
The number of region with the motif sequence is different between HOMER outputs
findmotifsgenome homer annotatepeaks
written by Aki 2
0 votes
4 replies
3.0K views
Cut&Run and heatmap
macs2 bowtie2
updated by gglim 22 • | written by qudrat.nii 4
0 votes
12 replies
9.2K views
txt file to bigwig
meme bigwig
updated by GenoMax 16K • | written by tanni93 5
0 votes
2 replies
1.2K views
Help me with Heatmap
rna-seq r deseq2
updated by zx8754 1.2K • | written by vmpsb 0
0 votes
2 replies
946 views
identify the coordinate for coding and non_coding region.
coding non_coding
written by G.S 6
16 votes
25 replies
68K views
Download All The Bacterial Genomes From Ncbi
ncbi
updated by GenoMax 16K • | written by rehma.ar 30
0 votes
2 replies
4.9K views
Salmon vs Kallisto vs RSEM
rsem quantification kallisto salmon
written by Mohamed Abderrahmane 2
1 vote
0 replies
763 views
virus genome annotation
annotation gff3 consensus ncbi coding_regions
updated by Ram 4.5K • | written by G.S 6
2 votes
7 replies
5.0K views
Tool: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
ensembl biomart annotation
written by Shred 163
0 votes
1 reply
849 views
Subset of Transcripts- How do I proceed with it?
stringtie
updated by Carlo Yague 906 • | written by Varsha 0
0 votes
2 replies
5.5K views
How can run cd-hit-est with a clstr threshold less than 0.8?
cd-hit cluster
updated by Asaf 1.0K • | written by m.koohi.m 12
0 votes
2 replies
1.2K views
Tools for chromosomal aneuploidy detection
human-genetics aneuploidy ngs
updated by Ram 4.5K • | written by adarsh 8
0 votes
0 replies
508 views
PyRMD
machine-learning cheminformatics virtual-screening
updated by Ram 4.5K • | written by s 0
1 vote
5 replies
1.8K views
Invalid CIGAR after using bam clipOverlap
validatesamfile cigar bam clipoverlap
written by MboiTui 2
0 votes
0 replies
555 views
Determining rs ids from SNP HGV base ID?
rsid hgv snp
updated by Ram 4.5K • | written by Katherine 0
0 votes
5 replies
1.8K views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
seurat pseudobulk single-cell deseq2 scrna
written by Sara 4
0 votes
1 reply
2.1K views
Facing problem with single cell rna seq annotation using singleR
singler scrna-seq
updated by Ram 4.5K • | written by TNF_alpha 0
0 votes
0 replies
671 views
Imputed data doesn't match directly genotyped APOE genotype
apoe directgenotyping imputation
written by kl 2
0 votes
0 replies
426 views
Tubemap multiseq
vg
written by karciharun42 0
1 vote
3 replies
8.4K views
Attempt to set 'rownames' on an object with no dimensions
r microbiome spieceasi
updated by GenoMax 16K • | written by ks.sholohova 3
0 votes
0 replies
745 views
News: Online course: Population Genomic Inference from Low-Coverage Whole-Genome Sequencing Data
genotype-likelihoods low-coverage population-genomics angsd
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
916 views
How to decrease the motif score?
motif-score
updated by Ram 4.5K • | written by Hadia 0
0 votes
0 replies
511 views
immuCell Abundance infiltrate
immucell
updated by Ram 4.5K • | written by elbakri.fatimazahrae 0
0 votes
2 replies
1.2K views
Setting a threshold on gene expression for subsetting (scRNA-seq)
scrna-seq
updated by LauferVA 497 • | written by carolofharvest 6
0 votes
0 replies
867 views
MaxEntScan for rMATS results
maxentscan rmats
written by adi.gershon1 1
0 votes
0 replies
1.1K views
ERROR with Maker annotation: The assumed RepeatMasker installation directory /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not appear to be correct. E.g it does not contain a 'Lib
repeatmasker. maker. annotation.
written by Sony Nguyen 2
0 votes
2 replies
1.5K views
Number of non-ATCG nucleotides replaced by Salmon
rna-seq stringtie salmon
updated by Ram 4.5K • | written by Tonya S. 1
1 vote
4 replies
2.7K views
Tool: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvages Failed Runs
novademux novaseq illumina demultiplexing barcode
written by Brian Bushnell 2.0K
0 votes
11 replies
7.7K views
ComplexHeatmap - How to change fontsize of rowAnnotation
r complexheatmap
updated by Ram 4.5K • | written by hannes.bongartz 0
0 votes
2 replies
1.3K views
perl Error - needLargeMem Bigwig
bigwig perl mitosalt
written by marco.barr 22
0 votes
0 replies
623 views
Duplicates of the same gene in Orthogroup sequence files
orthofinder
written by niconps14 0
0 votes
5 replies
1.9K views
How to scrape BioMart data from https://sorfs.ugent.be/ website
biomart
updated by Pierre Lindenbaum 17K • | written by QX 9
0 votes
6 replies
4.8K views
Harmony integration group.by.var parameter
single-cell harmony
updated by jared.andrews07 1.9K • | written by Picasa 71
1 vote
1 reply
1.9K views
Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
af gnomad snp
updated by Jeremy Leipzig 2.3K • | written by liaotsungjen 1
0 votes
0 replies
694 views
Exon Annotation failed using homer annotatePeaks.pl
homer alternative-splicing annotatepeaks
updated by Ram 4.5K • | written by Alessia 0
1 vote
4 replies
2.3K views
How to calculate cell type frequency between two groups in single cell data
seurat single-cell sc-rna cell-type
updated by Francesco 2 • | written by Sara 4
0 votes
4 replies
1.4K views
Mutation counts corrected by number of samples
mutations wes genomics wgs
written by garcesj 5
0 votes
1 reply
4.2K views
bfctools merge [E::hts_open_format] Failed to open file
snp
updated by Ram 4.5K • | written by andemexoax 0
0 votes
1 reply
1.0K views
LDhat lookup table
ldhat
updated by Ram 4.5K • | written by Matteo 1
0 votes
0 replies
651 views
Can you use a polygenic risk score for a trait (e.g., BMI) in association analyses when it doesn't associate with BMI in the sample it is used?
polygenic-risk-score imputation
updated by Ram 4.5K • | written by kl 2
0 votes
5 replies
1.6K views
Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files
bowtie
written by Deepthi 0
0 votes
4 replies
2.0K views
Single cell analysis: Unable to subset cells in seurat object using desired nFeature_RNA cut off
single-cell
updated by Ram 4.5K • | written by TNF_alpha 0
0 votes
2 replies
1.7K views
Overlapping clusters for different biological conditions: Seurat, UMAP
seurat scrna-seq umap
written by bio_info 2
2 votes
4 replies
9.2K views
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell ambient-rna
updated by fracarb8 176 • | written by txema.heredia 31
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