PyRMD
Has anyone used this framework in his/her endeavor? - I ran the benchmarks as well as the screening modes and can not seem to interpret the results.
Here is the repository: https://github.com/cosconatilab/PyRMD
machine-learning
cheminformatics
virtual-screening
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
AI / ML sequence based mRNA half life prediction
written by petergrahamclark •I’m looking for an AI model for mammalian mRNA half life prediction. There are a few out there the problem is when I actually go …
-
Tool: euka: Robust detection of eukaryotic taxa from modern and ancient environmental DNA using pan…
written by Nicola •We are excited to share our new tool, euka, for the robust and rapid screening of mitochondrial arthropodic and tetrapodic DNA in ancient environmental samples …
-
Redundancy reduction of de novo transcriptome assemblies with Compacta?
written by Dunois •I've been sweating over how best to reduce the redundancy in a *de novo* transcriptome assembled using `Trinity`. I found this tool called [`Compacta`][1] ([here's …
-
How to combine a multi sample VCF from multiple sample VCF and interpret a multi sample vcf of bact…
written by S ARI used GATK HaplotypeCaller for Variant calling of 2300 MTB strains. Now i want to make it a multi Sample VCF. I used CombineVariants but …
-
Arlequin interpretation for demography and molecular indices
written by micro32uvas •Hi there, I used Arlequin for a Molecular indices, demographic expansions, comparing the pairwise distances and pairwise Fst between 5 groups. Now that i got …
-
VCF format: what does AD 1,0 denote?
written by jtwalker •I'm looking at one of my VCF files and I noticed that allele depth (AD) isn't just one number, but rather two values seperated by …
-
Tool: GimmeMotifs 0.11.1: for all your transcription factor motif needs
written by simon.vanheeringenI'm happy to announce the latest release of **GimmeMotifs** (0.11.1) GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains …
-
.clc to fastq
written by KasthuriMy collaborator has processed .clc RNA seq data but not the fastq file which needs to be submitted to GEO. He needs to ask the …
-
number of significant genes different between 2 different runs of DESEQ2
written by modockesner •Hi, A lab member has the results cvs file from DESEQ2. I am trying to recreate the results given that she lost her initial runs …
-
Using Bayespeak for Paired-end reads
written by Nathan •Hi everyone, I was wondering if anyone knew how well BayesPeak performs on paired-end ChIP-seq reads (MNase-treated) - or even if it can be ran …