Calculating F_IS, F_IT on ancient DNA
I am trying to calculate genetic diversity within a handful of ancient communities. I have 1240K genotype data (made pseudohaploid), and I need to generate statistics to estimate the levels of genetic diversity within these populations.
I was looking at F_IS and F_IT. Does anyone have any recommendations on how to calculate these on pseudohaploid aDNA. I have the data in Plink format.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
News: Population Genomics workshop - online, 21–25 September
written by Physalia-courses
-
Calculate significance (P values) of Fst values
written by doodle •
-
Calculating Fst from low coverage data using genotype likelihoods
written by Jautis
-
How do I plot RFMix results?
written by devenvyas
-
PCA on pairwise allele sharing counts
written by devenvyas
-
Calculating allele frequency differences between two populations at sites across the genome
written by devenvyas
-
Figuring out if populations from two regions share the same Neanderthal haplotypes...
written by devenvyas
-
Scatter plot when there is a standard error for both axes
written by devenvyas
-
calculating within population nucleotide diversity for a virus population
written by vjmorley •
-
Seeking different methods of estimating Neanderthal ancestry in modern human SNP data
written by devenvyas
