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devenvyas
devenvyas
Reputation:
770
Joined:
12.3 years ago
Last seen:
2.1 years ago
Location:
Stony Brook
Latest posts by user
0 votes
1 reply
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Comment: Comment: Realigning BAM files to new reference
written by devenvyas devenvyas
0 votes
2 replies
997 views
Converting GRCh38 30× 1000G data to GRCh37
bam 1000genomes alignment
updated by Ram Ram • written by devenvyas devenvyas
1 vote
0 replies
396 views
Calculating F_IS, F_IT on ancient DNA
adna
written by devenvyas devenvyas
0 votes
0 replies
0 views
Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
written by devenvyas devenvyas
0 votes
0 replies
0 views
Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
written by devenvyas devenvyas
0 votes
1 reply
0 views
Comment: Comment: Cannot download BAMs from SRA AWS
written by devenvyas devenvyas
0 votes
0 replies
0 views
Comment: Comment: Cannot download BAMs from SRA AWS
written by devenvyas devenvyas
0 votes
8 replies
3.3K views
Cannot download BAMs from SRA AWS
bam
updated by keller.mckowen • keller.mckowen • written by devenvyas devenvyas
0 votes
5 replies
3.7K views
How do I filter a multi-individual BCF file for genotype probabilities
vcf bcf
written by devenvyas devenvyas
0 votes
2 replies
5.2K views
bcftools merge is resulting in a lot of missing data, how do I fix this?
vcf bcf
updated by r.shamsi • r.shamsi • written by devenvyas devenvyas
0 votes
0 replies
1.0K views
Getting frequencies for multiple SNPs from dbSNP at once?
dbsnp snp
written by devenvyas devenvyas
0 votes
1 reply
1.1K views
Quick way of clearing out rs IDs from VCF?
vcf
written by devenvyas devenvyas
0 votes
0 replies
1.3K views
How do I convert GPs to GLs?
imputation vcf
written by devenvyas devenvyas
0 votes
1 reply
1.8K views
Imputing missing genetic map distances from a bim file
plink snp centimorgan
updated by shenzhongjun • shenzhongjun • written by devenvyas devenvyas
1 vote
1 reply
1.8K views
Getting centimorgan map units for 1000 Genomes data
plink
updated by Kevin Blighe Kevin Blighe • written by devenvyas devenvyas
0 votes
0 replies
0 views
Comment: C: Plot local ancestry on chromosome
written by devenvyas devenvyas
1 vote
1 reply
2.9K views
How do I plot RFMix results?
r
updated by samuelandjw • samuelandjw • written by devenvyas devenvyas
0 votes
0 replies
919 views
Recs for what to use for analyzing IBS sharing (from phased, imputed VCFs)?
ibd
written by devenvyas devenvyas
0 votes
1 reply
0 views
Comment: C: Clipping reads within BAM files?
written by devenvyas devenvyas
0 votes
0 replies
862 views
Finding number of reads and base calls at ~10,000 non-SNPs using BAM file?
ancientdna bam
written by devenvyas devenvyas
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