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samuelandjw
samuelandjw
Reputation:
270
Joined:
8.8 years ago
Last seen:
2.0 years ago
Location:
United States
Latest posts by user
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Comment: Comment: Is ComBat not able to to handle only two batches? What are good alternatives?
written by samuelandjw • samuelandjw
0 votes
3 replies
1.6K views
Is ComBat not able to to handle only two batches? What are good alternatives?
combat batch correction
written by samuelandjw • samuelandjw
0 votes
0 replies
716 views
Finding a list of heritable traits using GCTA
complex heritability traits gcta
written by samuelandjw • samuelandjw
1 vote
1 reply
1.0K views
Should we include genotype as covariates when performing EWAS?
methylation ewas dna
updated by Ram Ram • written by samuelandjw • samuelandjw
0 votes
1 reply
964 views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation ewas dna
updated by Ram Ram • written by samuelandjw • samuelandjw
0 votes
1 reply
1.1K views
Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome whole sequencing
updated by Pierre Lindenbaum Pierre Lindenbaum • written by samuelandjw • samuelandjw
0 votes
0 replies
738 views
How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated by Ram Ram • written by samuelandjw • samuelandjw
0 votes
1 reply
0 views
Comment: Comment: How to access the NCBI Molecular QTL Browser?
written by samuelandjw • samuelandjw
0 votes
3 replies
1.5K views
How to access the NCBI Molecular QTL Browser?
qtl
updated by GenoMax GenoMax • written by samuelandjw • samuelandjw
0 votes
0 replies
0 views
Comment: Comment: Any FastQC alternative
written by samuelandjw • samuelandjw
0 votes
0 replies
549 views
How to group EWAS traits like GWAS catalog does?
gwas ewas
written by samuelandjw • samuelandjw
2 votes
1 reply
925 views
reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation dna
updated by Papyrus Papyrus • written by samuelandjw • samuelandjw
0 votes
0 replies
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Answer: Answer: Unable to install dplyr on Fedora 35
written by samuelandjw • samuelandjw
1 vote
1 reply
928 views
EWAS: should DNA methylation level be the independent variable or dependent variable?
dna ewas methylation
updated by Peter • Peter • written by samuelandjw • samuelandjw
0 votes
0 replies
0 views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
written by samuelandjw • samuelandjw
0 votes
1 reply
988 views
Should we trust genotypes called in simple tandem repeat regions?
sequencing gatk wgs wes
updated by Istvan Albert Istvan Albert • written by samuelandjw • samuelandjw
0 votes
0 replies
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Comment: Comment: What is the largest freely available dataset of WGS samples?
written by samuelandjw • samuelandjw
4 votes
1 reply
1.6K views
GATK site filtering: when should I use VQSR or hard filtering?
vqsr gatk
updated by alba • alba • written by samuelandjw • samuelandjw
1 vote
0 replies
0 views
Answer: Answer: How to subset vcf by sample and write?
written by samuelandjw • samuelandjw
1 vote
0 replies
0 views
Comment: Comment: GATK VQSR for human WGS
written by samuelandjw • samuelandjw
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