Imputing missing genetic map distances from a bim file
I have a Plink dataset with 7.1 millions biallelic SNPs (which are in 1000G phase 3). I was able to recover genetic map distances for 2.5 million, but not for the rest.
I was wondering, is there a way I can get Plink or any other piece of software to impute the missing map distances?
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devenvyas
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I hope this answer by chrchang523 is useful to you Calculating genetic distance from VCF to MAP format
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