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0 votes
0 replies
707 views
How can i use ESM-1v ?
vep esm-1v
written by Meto • Meto
0 votes
0 replies
586 views
Cell type annotation mixed with other type cells
cell annotation.
updated by GenoMax GenoMax • written by Long • Long
0 votes
3 replies
1.3K views
Trimming tool
trimming
updated by Ram Ram • written by GeneC • GeneC
0 votes
0 replies
583 views
sci-RNA-seq
cell single seurat sci-rna-seq counts
written by kilcdincer • kilcdincer
0 votes
0 replies
763 views
genomic region of transcription factor
search homer motif
written by qudrat.nii • qudrat.nii
0 votes
5 replies
1.5K views
Reconstruction of locus, order contigs
contigs cluster alignment locus
updated by dthorbur dthorbur • written by BATMAN • BATMAN
0 votes
9 replies
2.6K views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
pca r variance
updated by marco.barr • marco.barr • written by diqixiaoyaoer • diqixiaoyaoer
1 vote
2 replies
2.3K views
constructing pangenome through psvcp
psvcp pangenome
updated by IrisChang • IrisChang • written by Bushra Bibi Bushra Bibi
0 votes
6 replies
2.4K views
What marks a De-Novo Genome assembly as FAILED?
nanopore denovo illumina assembly genome
written by SomeOne • SomeOne
0 votes
4 replies
2.8K views
How to handle duplicated genes in TCGA data?
tcga gdc mrna
updated by txema.heredia • txema.heredia • written by Ngrin • Ngrin
0 votes
9 replies
2.4K views
Faster Needleman-Wunsch rapid global alignment of two sequences?
needleman-wunsch alignment
written by Gabriel R. Gabriel R.
0 votes
2 replies
1.2K views
How to generate table_annovar from VCF input?
vcf annovar
updated by Pierre Lindenbaum Pierre Lindenbaum • written by melissachua90 • melissachua90
0 votes
0 replies
514 views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript quantify non-coding
written by Varsha • Varsha
0 votes
1 reply
1.2K views
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
star
updated by GenoMax GenoMax • written by huxiangyulove • huxiangyulove
0 votes
0 replies
725 views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition kegg module database genomics
written by O.rka O.rka
3 votes
5 replies
6.4K views
Tool: GRIDSS: the Genomic Rearrangement IDentification Software Suite
assembly structural-variation variant-calling
updated by dario.garvan dario.garvan • written by d-cameron d-cameron
0 votes
4 replies
2.3K views
Merge clusters in Seurat UMAP
seurat umap
written by kilcdincer • kilcdincer
0 votes
0 replies
567 views
Use of ichor CNA
dog cna genome
written by sainavyav22 • sainavyav22
1 vote
0 replies
759 views
News: Course on Manual Genome Curation
genome-assembly pretext-view manual-genome-curation
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
4 replies
2.3K views
Details on salmon index
salmon
updated by Rob Rob • written by Lorenzo • Lorenzo
0 votes
0 replies
675 views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
phg pangenome phg_v2
written by Jsarria.EEAD • Jsarria.EEAD
0 votes
2 replies
836 views
How can I calculate the OS of each patient?
overall-survival
written by Pedro • Pedro
0 votes
1 reply
903 views
mitochondrial genome assembly pipeline
mammals mitochondrial-genome
updated by Ram Ram • written by m90 • m90
0 votes
0 replies
626 views
cat-bgen fail
bgenix
updated by Ram Ram • written by lambard • lambard
0 votes
4 replies
1.6K views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
rna-seq patch freeze genome
updated by Jeremy Leipzig Jeremy Leipzig • written by Ali • Ali
0 votes
3 replies
1.0K views
getting exon coordinates
genomics
updated by Ram Ram • written by Xbox_27 • Xbox_27
0 votes
4 replies
1.2K views
How to extract cells of different species after mapping with combined genome?
snrna-seq scrna-seq
updated by Tony • Tony • written by vk • vk
0 votes
5 replies
2.4K views
Can I perform a correlation test with 3 biological replicates per condition?
rna-seq deseq2
updated by Ram Ram • written by manuelmourato25 • manuelmourato25
1 vote
4 replies
1.6K views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
utr masspec uorf peptide
updated by GenoMax GenoMax • written by Pierre Lindenbaum Pierre Lindenbaum
0 votes
1 reply
791 views
API kegg - IndexError: list index out of range
kegg api
updated by Nyksubuz • Nyksubuz • written by mirwa.zidi93 • mirwa.zidi93
0 votes
0 replies
752 views
Blog: The Current State and Future Prospects of Long-Read Sequencing
lrs
written by Novogene • Novogene
0 votes
0 replies
680 views
qPCR gene expression data analysis
qpcr geneexpression anova
written by ebertomeup • ebertomeup
0 votes
3 replies
1.2K views
Sam file Header problem
sam header
updated by Ram Ram • written by saifulislam99121 • saifulislam99121
0 votes
3 replies
1.8K views
Tool: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
minutes decimal offtopic degrees python
updated by Ram Ram • written by kuttibiotech2009 • kuttibiotech2009
0 votes
1 reply
1.5K views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scrna-seq qc single cell bdrhapsody analysis
updated by valdirbarth • valdirbarth • written by Salomé • Salomé
0 votes
0 replies
599 views
select set of intervals that cover a genomic region
granges bed
written by ntsopoul • ntsopoul
1 vote
1 reply
729 views
Tool: Collect dispersed executable files and run them by using bingo.
bingo
updated by Ram Ram • written by dwpeng • dwpeng
0 votes
4 replies
1.9K views
BiomartException: Query ERROR for existing dataset in BioMart
biomart ensembl wheat python pybiomart
written by Luqman • Luqman
0 votes
3 replies
1.5K views
ggrepel function: geom_text_repel()
ggplot2 ggrepel r
updated by Ram Ram • written by sooni • sooni
0 votes
4 replies
2.0K views
how to treat the replicates while performing WGCNA
clustering wgcna replicates
written by mavy • mavy
0 votes
1 reply
1.0K views
Calculate allelic frequency from VEP output vcf file
vep variant
written by ramiro.barrantes • ramiro.barrantes
0 votes
6 replies
3.8K views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
xml ncbi entrez-direct
updated by Ram Ram • written by millere • millere
0 votes
3 replies
1.6K views
What's next after GATK variant calling pipeline?
gatk pipeline figures dna-seq
updated by Michael Dondrup Michael Dondrup • written by mgranada3 • mgranada3
0 votes
1 reply
803 views
Add line under stat test
stats r
updated by Nyksubuz • Nyksubuz • written by G.S • G.S
0 votes
5 replies
2.4K views
Converting IGV to Figure using Illustrator (or other tools)
illustrator igv
updated by Craft • Craft • written by Daniel • Daniel
0 votes
0 replies
752 views
DOCK6 installation on MacOS M1
installation troubleshooting dock6
updated by GenoMax GenoMax • written by Rodolfo Adrián • Rodolfo Adrián
0 votes
4 replies
1.2K views
Genotyping sites with N in reference genome
gatk unifiedgenotyper
written by shpak.max • shpak.max
0 votes
4 replies
2.4K views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10xgenomics scrnaseq
updated by yura.grabovska • yura.grabovska • written by ev97 • ev97
0 votes
16 replies
3.5K views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast ncbi
updated by GenoMax GenoMax • written by hophuquy0944 • hophuquy0944
0 votes
4 replies
1.5K views
Sequencing Depth (Read Depth) Calculations
depth
written by R.L. • R.L.
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