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2 votes
2 replies
1.7K views
vg autoindex seems stuck after a week of running
vg pangenome
written by StevieP 2
0 votes
3 replies
1.7K views
Kraken2 Custom Database non-deterministic results
metagenomics kraken2
updated by colindaven 844 • | written by Bjorn 0
0 votes
1 reply
1.3K views
How to get 2 seurat objects into a DEseq
seurat deseq
updated by Ram 4.5K • | written by He11oJe11o 0
0 votes
0 replies
675 views
Rescaling normalized enrichment score (NES)
heatmap
written by CTLong 14
0 votes
3 replies
1.6K views
Splitting query fasta file for Diamond Blastp make the process faster?
diamond
written by kmat 0
0 votes
1 reply
761 views
Mapping difference with BWA
variant-calling samtools bam bwa genomics
updated by ATpoint 9.1K • | written by rj.rezwan 2
0 votes
0 replies
555 views
Kegg Pathways to Circos
genomics kegg circos
written by dlera.lozano 1
0 votes
6 replies
2.9K views
Problem in getting geo file through GEOQUERY
geoquery geo
updated by Ram 4.5K • | written by anasjamshed 14
0 votes
1 reply
1.2K views
Multi-ploid data in ANGSD and NGSadmix
ancestry diploid haploid admixture
updated by andersdetermig 2 • | written by Christopher 0
0 votes
2 replies
1.5K views
transanno liftvcf "Error: length of chromosome [chr] is not equal to length in chain file. Are you using correct reference?"
liftover transanno
written by ezz3 0
0 votes
10 replies
3.3K views
Add stats to the plot
r
written by G.S 6
0 votes
4 replies
1.3K views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
gatk unifiedgenotyper
written by shpak.max 8
0 votes
4 replies
1.6K views
Allele count of 2 for homoplasmic MT variants in VCF
variant-calling gatk vcf
written by Arton 2
0 votes
3 replies
1.6K views
downloading chemical database from ChEMBL
chembl pyrmd virtual-screening
updated by GenoMax 16K • | written by s 0
0 votes
3 replies
1.5K views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated by GenoMax 16K • | written by bioinfo 19
0 votes
2 replies
1.2K views
Multiplexing for pooled CRISPR screen sequencing
multiplex crispr-screen illumina
written by Tuấn Anh 0
2 votes
4 replies
3.0K views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
written by Aspire 43
0 votes
4 replies
1.8K views
Functional enrichment analysis for unique gene IDs
rna-seq
written by Pegasus 13
0 votes
2 replies
1.0K views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
seurat scrna-seq single-cell
written by Shukai 0
0 votes
3 replies
1.2K views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated by Pierre Lindenbaum 17K • | written by mrk 2
0 votes
3 replies
2.0K views
z-score of gene set
z-score scrna gene-set
written by Hien 0
0 votes
2 replies
1.1K views
converting transcript IDs (Ensembl) to gene symbols in R
rna-seq
updated by GenoMax 16K • | written by ashkan 16
0 votes
0 replies
625 views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics bacteria wgs amr resistome
updated by GenoMax 16K • | written by LuciaNhu 2
0 votes
2 replies
1.0K views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast fasta vcf gene
updated by Ram 4.5K • | written by Harshita 0
3 votes
0 replies
759 views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftover atac-seq csaw
updated by Ram 4.5K • | written by Rafael Soler 126
0 votes
0 replies
737 views
Job: PhD position for metagenomics analysis at the University of Udine
metagenomics
updated by Ram 4.5K • | written by Fabio Marroni 297
1 vote
5 replies
1.8K views
Practical Haplotype Graph v2 not finding correct paths
pangenome phg graph
written by beantkapoor16 1
0 votes
1 reply
1.0K views
DRAGEN gVCF files and joint calling GATK-GenomicsDB
dragen genomicsdb
updated by DBScan 53 • | written by brunomiwa 0
0 votes
0 replies
471 views
Last step of metagenome analysis before visualization
metagenome python analyis
written by Ayda Ecem 0
0 votes
3 replies
1.1K views
Generating a Bed file from a Fasta file
bed nullseq
updated by Ram 4.5K • | written by pirku 0
0 votes
3 replies
3.3K views
Running STRUCTURE from command line
structure
updated by Ram 4.5K • | written by giulia.trauzzi 3
0 votes
3 replies
3.5K views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics bootstrap
updated by Klaus S 16 • | written by Zeng Hao 4
1 vote
1 reply
1.4K views
Herald: The Biostar Herald for Monday, November 01, 2021
herald
updated by usa.cd.genomics 0 • | written by Biostar 380
4 votes
10 replies
14K views
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
updated by usa.cd.genomics 0 • | written by noodle 65
0 votes
0 replies
589 views
How to recover the entire sequence from all_contig_annotations.csv?
vdj single-cell tcr-seq cellranger 10x
written by dawnyipingzou 0
0 votes
4 replies
1.3K views
Where to find old version of GATK best practice
gatk
written by Zhenyu Zhang 130
0 votes
1 reply
895 views
Nextflow docker: Error response from daemon
sarek gatk4 docker nextflow
updated by Pierre Lindenbaum 17K • | written by Peter Chung 21
0 votes
0 replies
733 views
News: Online course- Advanced Python for Life Sciences
python-programming data-visualisation machine-learning
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
2.0K views
CreateSeuratObject taking very long
seurat
written by eae6d2e7 0
0 votes
2 replies
2.0K views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
written by ojaswinipandey 0
0 votes
4 replies
1.5K views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
sra whole-genome-sequencing ncbi
updated by Ram 4.5K • | written by Harshita 0
0 votes
4 replies
1.3K views
Filter Genome for Specific Sites
bedtools
updated by Ram 4.5K • | written by Anita 0
0 votes
3 replies
1.2K views
Error in using BioSampleParser tool: subscript out of bounds
r
updated by marco.barr 22 • | written by Mohamed Samir 3
0 votes
1 reply
954 views
Generating Group/Cluster Lists from fastq files
sequencing rna-seq dna-seq
updated by GenoMax 16K • | written by niruf 0
0 votes
0 replies
702 views
News: Online course: Network analysis in Systems Biology with R/Bioconductor
bioconductor systems-biology network-analysis r
updated by Ram 4.5K • | written by Physalia-courses 281
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, May 20, 2024
herald
written by Biostar 380
0 votes
2 replies
1.4K views
vcf phasing
beagle whatshap phasing
written by safeassli 1
0 votes
2 replies
1.2K views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r upset
written by sainavyav22 0
0 votes
1 reply
2.2K views
Illumina methylation EPIC V2 array
ewas methylation enrichment missmethyl epic
updated by fu_entomology 5 • | written by juliviglino 0
0 votes
2 replies
900 views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated by Ram 4.5K • | written by Sony Nguyen 2
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