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0 votes
3 replies
1.8K views
GATK Structural Variants Pipeline - Steps
sv gatk variant-calling
updated by Ram 4.5K • | written by Bioinformatics_begginner 2
0 votes
0 replies
803 views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
seurat single-cell scrna-seq
updated by Ram 4.5K • | written by ev97 4
0 votes
1 reply
783 views
GO analysis: Indicate genes corresponding to the pathway
geneontoloy go r
updated by marco.barr 22 • | written by sooni 2
0 votes
1 reply
710 views
How to hide label in layout file of MCscan (python version)
mcscan
updated by GenoMax 16K • | written by jinyi 0
0 votes
0 replies
489 views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated by Ram 4.5K • | written by JorgeVallejo 2
0 votes
0 replies
605 views
transcriptome annotation
annotation trinity transcriptome
updated by Ram 4.5K • | written by Asim Bin Arshad 0
0 votes
6 replies
1.5K views
Why most genes have high padj values
rna-seq deg
updated by Ram 4.5K • | written by mnx0723 0
0 votes
14 replies
6.2K views
How to find tandem duplications pattern in a DNA sequence
repeat
updated by micah 3 • | written by kumajis 0
0 votes
1 reply
1.1K views
PCA Visualization error in R - arguments imply differing number of rows
snps pca gbs linux r
updated by zx8754 1.2K • | written by Ali 0
0 votes
4 replies
1.6K views
GO analysis: p-value range
go r
updated by Matthias Zepper 524 • | written by sooni 2
3 votes
4 replies
1.6K views
News: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
besttalk platformpresentation offtopic
updated by Ram 4.5K • | written by Dr. 2
0 votes
3 replies
1.2K views
seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from input file
subseq seqtk extractionproblem
updated by GenoMax 16K • | written by KHURRAM SHAHZAD 0
0 votes
0 replies
509 views
Challenges of Affymetrix probe IDs for grouping similar genes to calculate their mean
r mean affymetrix probes grouping
written by Maryam 0
0 votes
4 replies
1.4K views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
rna-seq
written by Bibi 0
1 vote
2 replies
2.9K views
is there a tool to recover corrupted fastq files
fastq short-read
updated by Tommaso 1 • | written by pt.taklifi 7
0 votes
0 replies
706 views
handling bio replicates for chromHMM
replicates chromhmm
written by Hasan_Daaboul 0
0 votes
0 replies
516 views
Tool for within-sample ligand-receptor analysis (bulk RNA-seq) ?
cell-cell communication ligand-receptor self-regulation
written by DGTool 30
0 votes
1 reply
1.2K views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics r
updated by ATpoint 9.1K • | written by rj.rezwan 2
0 votes
2 replies
1.6K views
Design for complex RNA-Seq experiment using Deseq2
model.matrix rna-seq limma deseq2 edger
written by Ezequiel 0
2 votes
0 replies
529 views
Tool: Sequence alignment on split read event such as inversion, duplication and complex nested events.
minimap alignment ngmlr
written by micah 3
0 votes
0 replies
565 views
problems in installing rDock
rdock
updated by Ram 4.5K • | written by Rodolfo Adrián 0
0 votes
6 replies
5.4K views
CellRanger output more cells than specified using --force-cells? Why?
scrna-seq cellranger
updated by scideas 3 • | written by rohitsatyam102 95
0 votes
2 replies
1.6K views
Checking chromosome builds for genotyping data
gwas liftover plink
updated by Muhammad 2 • | written by mari.lynne 0
0 votes
0 replies
619 views
Buzzled by retrieving metadata on bioprojects for an organism using "rentrez" package
r
updated by Pierre Lindenbaum 17K • | written by Mohamed Samir 3
0 votes
0 replies
493 views
Tera-scale metagenomic coassembly tool
co-assembly metagenomics
written by Moinuddin 0
0 votes
1 reply
955 views
RNAseq coverage vs depth for transcript isoform expression?
rnaseq
updated by Gordon Smyth 916 • | written by marineandriot 0
0 votes
0 replies
720 views
How can i use ESM-1v ?
vep esm-1v
written by Meto 0
0 votes
0 replies
598 views
Cell type annotation mixed with other type cells
cell annotation.
updated by GenoMax 16K • | written by Long 1
0 votes
3 replies
1.3K views
Trimming tool
trimming
updated by Ram 4.5K • | written by GeneC 0
0 votes
0 replies
590 views
sci-RNA-seq
cell single seurat sci-rna-seq counts
written by kilcdincer 1
0 votes
0 replies
768 views
genomic region of transcription factor
search homer motif
written by qudrat.nii 4
0 votes
5 replies
1.6K views
Reconstruction of locus, order contigs
contigs cluster alignment locus
updated by dthorbur 350 • | written by BATMAN 0
0 votes
9 replies
2.6K views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
pca r variance
updated by marco.barr 22 • | written by diqixiaoyaoer 2
1 vote
2 replies
2.3K views
constructing pangenome through psvcp
psvcp pangenome
updated by Irissssss 2 • | written by Bushra Bibi 8
0 votes
6 replies
2.4K views
What marks a De-Novo Genome assembly as FAILED?
nanopore denovo illumina assembly genome
written by SomeOne 33
0 votes
4 replies
2.9K views
How to handle duplicated genes in TCGA data?
tcga gdc mrna
updated by txema.heredia 31 • | written by Ngrin 0
0 votes
9 replies
2.4K views
Faster Needleman-Wunsch rapid global alignment of two sequences?
needleman-wunsch alignment
written by Gabriel R. 292
0 votes
2 replies
1.2K views
How to generate table_annovar from VCF input?
vcf annovar
updated by Pierre Lindenbaum 17K • | written by melissachua90 7
0 votes
0 replies
517 views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript quantify non-coding
written by Varsha 0
0 votes
1 reply
1.3K views
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
star
updated by GenoMax 16K • | written by huxiangyulove 0
0 votes
0 replies
746 views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition kegg module database genomics
written by O.rka 75
3 votes
5 replies
6.5K views
Tool: GRIDSS: the Genomic Rearrangement IDentification Software Suite
assembly structural-variation variant-calling
updated by dario.garvan 52 • | written by d-cameron 298
0 votes
4 replies
2.3K views
Merge clusters in Seurat UMAP
seurat umap
written by kilcdincer 1
0 votes
0 replies
571 views
Use of ichor CNA
dog cna genome
written by sainavyav22 0
1 vote
0 replies
769 views
News: Course on Manual Genome Curation
genome-assembly pretext-view manual-genome-curation
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
4 replies
2.4K views
Details on salmon index
salmon
updated by Rob 747 • | written by Lorenzo 0
0 votes
0 replies
685 views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
phg pangenome phg_v2
written by Jsarria.EEAD 0
0 votes
2 replies
840 views
How can I calculate the OS of each patient?
overall-survival
written by Pedro 0
0 votes
1 reply
912 views
mitochondrial genome assembly pipeline
mammals mitochondrial-genome
updated by Ram 4.5K • | written by m90 3
0 votes
0 replies
630 views
cat-bgen fail
bgenix
updated by Ram 4.5K • | written by lambard 0
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