This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
1 reply
869 views
Alignment of samples with spike-in
alignment multimapping rna-seq chip-seq spike-in
updated by GenoMax GenoMax • written by maria.soler • maria.soler
0 votes
2 replies
831 views
How are score_weights calculated in this code?
single-cell
written by carolofharvest • carolofharvest
0 votes
1 reply
925 views
How to convert Haps file to vcf file?
pre-phasing gwas imputation
updated by curious curious • written by SeoG • SeoG
0 votes
0 replies
608 views
Trouble converting tfam and tped to map and ped files
plink ped tfam tped map
written by Samantha • Samantha
0 votes
1 reply
776 views
Microbial Signal Transduction Database
mist
updated by zx8754 zx8754 • written by Shravani • Shravani
0 votes
1 reply
1.1K views
DESeq2 error
deseq2
updated by ATpoint ATpoint • written by sooni • sooni
0 votes
0 replies
647 views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq imprinted 10x genes
written by singcell • singcell
0 votes
1 reply
822 views
When should I use R-MarkDown over R-Script ?
r rscript rmarkdown
updated by ATpoint ATpoint • written by Amr • Amr
0 votes
2 replies
923 views
LncRNA Nomenclature
enst nomenclature lncrna gbb ensg
written by jain72744 • jain72744
1 vote
2 replies
1.3K views
EdgeR - relationship between logFC and coefficients
differential-expression r edger
updated by Gordon Smyth Gordon Smyth • written by BioStar55555 • BioStar55555
0 votes
5 replies
1.7K views
Importing a fastq file
fastq
updated by size_t • size_t • written by oumo • oumo
0 votes
1 reply
822 views
Question about methylation location
methylation wgbs bisulfide
updated by dthorbur dthorbur • written by Eren • Eren
0 votes
0 replies
745 views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
classification metagenomics krona kraken2
written by Aytaç • Aytaç
0 votes
0 replies
646 views
How do I calculate SE or P value if I only have BETA
prscsx beta se pvalue
updated by zx8754 zx8754 • written by curious_butterfly • curious_butterfly
0 votes
0 replies
1.0K views
supervised admixture
supervised admixture
written by RT • RT
2 votes
0 replies
647 views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
landscapegenomics snps localadaptation gis
written by Physalia-courses Physalia-courses
0 votes
8 replies
2.0K views
Different output for read length
samtools bam
written by marco.barr • marco.barr
0 votes
1 reply
1.0K views
Snakemake fails to find conda in PBS
snakemake
updated by tim.booth • tim.booth • written by yixinzeng • yixinzeng
0 votes
2 replies
856 views
Presence of unknown sites in ANNOVAR output file
annovar
updated by Ram Ram • written by sainavyav22 • sainavyav22
1 vote
4 replies
3.0K views
Truncated metadata file report from ENA Portal API
ena python
written by Giulia • Giulia
0 votes
0 replies
593 views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo wgs dna-seq assembling
written by Matvii Mykhailichenko • Matvii Mykhailichenko
1 vote
3 replies
3.7K views
JASPAR2024_getMatrixSet error
jaspar2024 getmatrixset
updated by Ram Ram • written by maplewj • maplewj
0 votes
5 replies
1.6K views
How to convert normalized BigWig file to count matrix?
count-matrix bigwig
written by feather-W • feather-W
0 votes
3 replies
1.3K views
bcftools - reducing to "sites-only"?
sites-only bcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Matthew • Matthew
0 votes
4 replies
4.0K views
Have you ever obtained user guide of ExomeCNV?
cnv
updated by lffu_0032 lffu_0032 • written by oghzzang • oghzzang
0 votes
1 reply
705 views
input file for alternative splicing in rmats in linux
rmats
updated by Ram Ram • written by Lambodarswain316 • Lambodarswain316
0 votes
2 replies
1.3K views
Server or aws cloud- which one is better for gatk pipeline
aws server calling gatk cloud
updated by Michael Dondrup Michael Dondrup • written by ashaneev07 • ashaneev07
1 vote
2 replies
1.6K views
ComBat_Seq stuck adjusting the data
batch-effect rnaseq combat-seq
updated by theresia.celine • theresia.celine • written by NorbertK • NorbertK
0 votes
3 replies
5.8K views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq picard validatesamfile
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Lila M Lila M
0 votes
3 replies
2.1K views
Nextflow: how to get the process work dir, within the process
nextflow
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ScottDansk • ScottDansk
1 vote
0 replies
939 views
What is Deepvariant default filtering values ?
vcf calling filter variant deepvariant
written by Shae • Shae
0 votes
1 reply
1.0K views
Enhanced Volcano-Cut off
foldchange enhancedvolcano
updated by marco.barr • marco.barr • written by odi • odi
0 votes
6 replies
3.8K views
Copy number Variation analysis using conumee
r software error sequencing genome
updated by GenoMax GenoMax • written by gs000095 • gs000095
0 votes
2 replies
2.8K views
Conda severely broken after attempting mamba install
biopython conda mamba pycosat
updated by Quentin • Quentin • written by kacollier • kacollier
2 votes
3 replies
4.2K views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
cellcyclescoring sctransform seurat
updated by Kimaya • Kimaya • written by GPM • GPM
0 votes
0 replies
506 views
Summary Statistics SNPs not found in Target data
snp plink prs
updated by Ram Ram • written by curious_butterfly • curious_butterfly
0 votes
4 replies
2.3K views
Contig assembly task, errors
dna genetics contig assembly
updated by Ram Ram • written by samRayne • samRayne
0 votes
0 replies
1.1K views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep vcf gnomad
written by asalimih • asalimih
0 votes
9 replies
2.6K views
kinannote software installation problems
kinannote
updated by Emanoelle • Emanoelle • written by Elizabeth • Elizabeth
0 votes
2 replies
2.0K views
Obtaining Infinium Methylation450K manifest for hg38
tcga hg38 methylation illumina
updated by Zhenyu Zhang Zhenyu Zhang • written by elisheva elisheva
0 votes
0 replies
639 views
Pathway analysis of Bacteria from denovo genome assembly
kegg-kass wgs pathway denovo
updated by Ram Ram • written by mathavanbioinfo mathavanbioinfo
0 votes
1 reply
3.8K views
Seurat V5 integration
seurat integration
updated by Ram Ram • written by starswillfade • starswillfade
0 votes
2 replies
1.3K views
Error in plotting PCA plot in seurat
pca single-cell seurat scrna rna
updated by Ram Ram • written by Sumeet • Sumeet
0 votes
0 replies
677 views
News: Online course: Introduction to Deep Learning
python deep-learning convolutional-neural-network machine-learning
updated by Ram Ram • written by Physalia-courses Physalia-courses
2 votes
5 replies
5.1K views
How to compare compare two Sam files to check mapping
alignment
updated by DavidStreid • DavidStreid • written by madhu.9124 • madhu.9124
0 votes
2 replies
953 views
How/where can I get fungal mitogenome data for analysis?
fungal mitogenome
updated by GenoMax GenoMax • written by madders73 • madders73
0 votes
2 replies
1.0K views
How can I analyze normalized expression data?
deseq2 rna-seq
written by mnx0723 • mnx0723
0 votes
4 replies
6.2K views
FarmCPU - how to explain the reported 'effect'?
gwas
updated by chloek88 • chloek88 • written by Philipp Bayer Philipp Bayer
1 vote
7 replies
2.2K views
RNA seq analysis
deseq rna-seq
written by Jacek • Jacek
0 votes
3 replies
1.6K views
TFs and Gene databases
transcription-factor target regulatory-networks
updated by b.contreras.moreira • b.contreras.moreira • written by ijarne • ijarne
Recent Votes
Recent Locations
Recent Replies