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0 votes
4 replies
1.7K views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
rna-seq patch freeze genome
updated by Jeremy Leipzig 2.3K • | written by Ali 0
0 votes
3 replies
1.0K views
getting exon coordinates
genomics
updated by Ram 4.5K • | written by Xbox_27 0
0 votes
4 replies
1.2K views
How to extract cells of different species after mapping with combined genome?
snrna-seq scrna-seq
updated by Tony 0 • | written by vk 1
0 votes
5 replies
2.4K views
Can I perform a correlation test with 3 biological replicates per condition?
rna-seq deseq2
updated by Ram 4.5K • | written by manuelmourato25 0
1 vote
4 replies
1.6K views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
utr masspec uorf peptide
updated by GenoMax 16K • | written by Pierre Lindenbaum 17K
0 votes
1 reply
798 views
API kegg - IndexError: list index out of range
kegg api
updated by Nyksubuz 2 • | written by mirwa.zidi93 0
0 votes
0 replies
762 views
Blog: The Current State and Future Prospects of Long-Read Sequencing
lrs
written by Novogene 54
0 votes
0 replies
692 views
qPCR gene expression data analysis
qpcr geneexpression anova
written by ebertomeup 0
0 votes
3 replies
1.3K views
Sam file Header problem
sam header
updated by Ram 4.5K • | written by saifulislam99121 0
0 votes
3 replies
1.9K views
Tool: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
minutes decimal offtopic degrees python
updated by Ram 4.5K • | written by kuttibiotech2009 3
0 votes
1 reply
1.6K views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scrna-seq qc single cell bdrhapsody analysis
updated by valdirbarth 2 • | written by Salomé 0
0 votes
0 replies
612 views
select set of intervals that cover a genomic region
granges bed
written by ntsopoul 6
1 vote
1 reply
742 views
Tool: Collect dispersed executable files and run them by using bingo.
bingo
updated by Ram 4.5K • | written by dwpeng 14
0 votes
4 replies
1.9K views
BiomartException: Query ERROR for existing dataset in BioMart
biomart ensembl wheat python pybiomart
written by Luqman 0
0 votes
3 replies
1.5K views
ggrepel function: geom_text_repel()
ggplot2 ggrepel r
updated by Ram 4.5K • | written by sooni 2
0 votes
4 replies
2.1K views
how to treat the replicates while performing WGCNA
clustering wgcna replicates
written by mavy 1
0 votes
1 reply
1.0K views
Calculate allelic frequency from VEP output vcf file
vep variant
written by ramiro.barrantes 6
0 votes
6 replies
3.8K views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
xml ncbi entrez-direct
updated by Ram 4.5K • | written by millere 0
0 votes
3 replies
1.6K views
What's next after GATK variant calling pipeline?
gatk pipeline figures dna-seq
updated by Michael Dondrup 5.6K • | written by mgranada3 6
0 votes
1 reply
812 views
Add line under stat test
stats r
updated by Nyksubuz 2 • | written by G.S 6
0 votes
5 replies
2.4K views
Converting IGV to Figure using Illustrator (or other tools)
illustrator igv
updated by Craft 0 • | written by Daniel 4
0 votes
0 replies
762 views
DOCK6 installation on MacOS M1
installation troubleshooting dock6
updated by GenoMax 16K • | written by Rodolfo Adrián 0
0 votes
4 replies
1.2K views
Genotyping sites with N in reference genome
gatk unifiedgenotyper
written by shpak.max 8
0 votes
4 replies
2.4K views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10xgenomics scrnaseq
updated by yura.grabovska 94 • | written by ev97 4
0 votes
16 replies
3.5K views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast ncbi
updated by GenoMax 16K • | written by hophuquy0944 0
0 votes
4 replies
1.5K views
Sequencing Depth (Read Depth) Calculations
depth
written by R.L. 0
0 votes
1 reply
817 views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation vcf vep zygosity deepvariant
written by asalimih 6
0 votes
0 replies
544 views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity metatranscriptome
written by jway 0
0 votes
2 replies
1.9K views
Cannot install bwa-mem2 via conda
conda mamba python
updated by Ram 4.5K • | written by jsmith120f 0
0 votes
3 replies
1.5K views
genome finishing
finishing genome
updated by sihan.bu 0 • | written by trezini 0
0 votes
5 replies
2.2K views
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos atacseq
updated by Pierre Lindenbaum 17K • | written by biology_inform 6
0 votes
4 replies
1.5K views
Add stats to boxplot in R
stats r
written by G.S 6
0 votes
1 reply
3.7K views
Seurat v5 and how to correctly integrate across multiple experiments
seurat scrna r
updated by Papyrus 310 • | written by yura.grabovska 94
0 votes
1 reply
1.7K views
Difference in number of reads when using duplex and simplex base calling with Dorado
base calling nanopore simplex dorado duplex
updated by GenoMax 16K • | written by Lélé 1
0 votes
5 replies
1.7K views
calculating genomic coverage/ base overlap in R
genomics
updated by 1769mkc 127 • | written by Xbox_27 0
0 votes
5 replies
2.1K views
Annotating file using bcftools
annotation plink bcftools
written by kl 2
0 votes
9 replies
4.5K views
Duplicated reads (IDs) from nanopore sequencing
bam nanopore sequencing
written by njornet 2
0 votes
3 replies
1.2K views
Problem with Calling Variants from RNA-Seq data
vcf gatk benchmark giab rna-seq
written by Esraa 1
0 votes
4 replies
2.1K views
Getting differential ChIP-seq peaks between conditions after calling consensus peaks
manorm chip-seq consensus peaks
written by Alexandra 0
3 votes
1 reply
1.5K views
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
limma
updated by dariober 1.5K • | written by Holly 3
0 votes
0 replies
381 views
ReactomeGSA
reactomegsa
written by Shaimaa Gamal 1
0 votes
0 replies
483 views
News: New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
keeplearning tscourses
written by Transmitting Science communication 7
0 votes
5 replies
1.7K views
bbmerge (bbmap) ~ error with insert size file output
bbtools bbmerge bbmap
updated by GenoMax 16K • | written by chrisk 0
0 votes
1 reply
1.1K views
perseus software (version 1.5.5)
mass spectrometry preseus data
written by Bioinformatics_16 0
0 votes
0 replies
617 views
Why the shape of RCS is contradictory to the p value for nonlinearity.
rcs ggplot2 ggplot r
updated by GenoMax 16K • | written by Dude 0
0 votes
0 replies
534 views
NEURON, Brian2, NEST, or PyNN
nest neuron pynn brian2
written by brunofelicianodeomena 0
0 votes
2 replies
6.3K views
Alphafold 3 pLDDT coloring scheme in chimerax?
chimerax alphaphold alphaphold3
updated by colindaven 844 • | written by mbrav005 0
0 votes
1 reply
813 views
Polish a large genome with Pilon
pilon pacbio polish illumina
written by san96 19
0 votes
2 replies
1.0K views
Doubt about the process of annotation, detection, identification and classification of transposable elements
annotation transposableelements
written by MarcosCosta 0
1 vote
2 replies
1.2K views
Genome Visualization Tools
bacterial genome
updated by GenoMax 16K • | written by dlera.lozano 1
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