getting exon coordinates
1 answer
A combination of bash and awk can do the work, suppose you have the gff file annotation of your gene of interest and a text file with GeneName by line you can do something like :
grep -w -F -f geneofinterest.tsv yourannotationfile.gff | awk '{print $1,$2,$3, $4, $5}'|head
You can save and redirect the output to file
grep -w -F -f geneofinterest.tsv yourannotationfile.gff | awk '{print $1,$2,$3, $4, $5}' > genecoodinate.tsv
I hope this works for you
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