15 hours ago by
biocellbio
•
0
0
votes
0
replies
161
views
0
votes
0
replies
72
views
0
votes
0
replies
113
views
1
vote
0
replies
82
views
0
votes
0
replies
88
views
0
votes
0
replies
85
views
0
votes
0
replies
78
views
0
votes
0
replies
92
views
0
votes
0
replies
104
views
0
votes
1
reply
139
views
updated 1 day ago by
ATpoint
82k
•
written 1 day ago by
AaronJaime
•
0
0
votes
0
replies
106
views
0
votes
0
replies
95
views
1
vote
0
replies
116
views
0
votes
0
replies
99
views
1 day ago by
synat.keam
▴
100
0
votes
1
reply
428
views
updated 1 day ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
0
votes
0
replies
110
views
0
votes
3
replies
232
views
1
vote
2
replies
252
views
0
votes
0
replies
134
views
0
votes
2
replies
231
views
0
votes
5
replies
301
views
updated 1 day ago by
GenoMax
141k
•
written 2 days ago by
Bertalan_Takacs
▴
90
0
votes
0
replies
132
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
glaciya2018
•
0
0
votes
0
replies
271
views
0
votes
1
reply
143
views
updated 2 days ago by
Sofia
•
0
•
written 3 days ago by
mawigoj318
•
0
0
votes
0
replies
134
views
3 days ago by
salias
•
0
0
votes
4
replies
258
views
2 days ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
115
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
newuser2024
•
0
1
vote
2
replies
208
views
2 days ago by
ahmad.sajad4541
•
0
0
votes
0
replies
101
views
0
votes
0
replies
107
views
0
votes
1
reply
149
views
updated 3 days ago by
Mensur Dlakic
★
27k
•
written 3 days ago by
benguyarenbeyaz98
•
0
0
votes
2
replies
243
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
v.berriosfarias
▴
140
2
votes
9
replies
832
views
0
votes
11
replies
492
views
0
votes
1
reply
156
views
updated 3 days ago by
bk11
★
2.4k
•
written 3 days ago by
alphaflylizard
•
0
0
votes
0
replies
98
views
3 days ago by
ohtang7
▴
40
0
votes
1
reply
161
views
0
votes
5
replies
304
views
0
votes
0
replies
91
views
0
votes
0
replies
97
views
1
vote
3
replies
220
views
1
vote
3
replies
259
views
3 days ago by
Art1ess
•
0
0
votes
1
reply
139
views
updated 3 days ago by
bk11
★
2.4k
•
written 4 days ago by
Susmita Mandal
▴
110
1
vote
1
reply
170
views
0
votes
0
replies
87
views
0
votes
1
reply
146
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
Cameron.walker9900
•
0
0
votes
8
replies
325
views
0
votes
0
replies
110
views
updated 4 days ago by
Ram
43k
•
written 4 days ago by
maxime.policarpo
▴
200
0
votes
0
replies
93
views
0
votes
0
replies
95
views
Recent Votes
Recent Locations •
All
Russia, just now
France, 1 minute ago
Dublin, Ireland, 9 minutes ago
Russia, 10 minutes ago
Japan, 10 minutes ago
UK, 13 minutes ago
USA, 14 minutes ago
Recent Awards •
All
Popular Question to
rohitsatyam102
▴
850
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Thanks Ram
Comment: ScRNA data question
by
starswillfade
▴
10
features <- SelectIntegrationFeatures(object.list = merged_dat)
data.anchors <- FindIntegrationAnchors(object.list = merged_dat,
…
Comment: gvcf joint calling
by
zihanss
•
0
Thank you for your help! I really appreciate it!
And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Guille
•
0
Thank you for your answer!
The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴
30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Traffic: 1618 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6