Entering edit mode
9 days ago
synat.keam
▴
100
Dear All,
I am using monocle 3 to perform Trajectory analysis and use deg <- graph_test(cds, neighbor_graph = "principal_graph") to examine genes that changed as a function of pseudotime. I am a bit unfamiliar with the output and have read the monocle3 documentation, but still unclear.
The output I got contain various columns such as gene names, status, p_value, morans_test_statistics, morans_I and q_value. I am wondering how do I know which genes are downregulated or upregulated based on these columns? I have attached the image of the output I got. Hope someone can help. Thanks in advance!
Best,
