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v.berriosfarias
v.berriosfarias
Reputation:
140
Joined:
5.8 years ago
Last seen:
7 months ago
Location:
Santiago
Latest posts by user
0 votes
1 reply
450 views
Building a hidden markov model from synthetic protein designs
structural-designs msa hmm proteins
updated by Joe Joe • written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
693 views
Appropiate normalization method for OTU table built from MAGs abundances estimations?
mag normalization otus metagenomics
written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
639 views
How to deal with missing annotations in RNASeq data?
eggnogmapper rnaseq
updated by dthorbur dthorbur • written by v.berriosfarias • v.berriosfarias
0 votes
2 replies
1.1K views
How to calculate identity percentage between proteins contained in a FASTA file?
protein fasta alignment
updated by Ram Ram • written by v.berriosfarias • v.berriosfarias
1 vote
0 replies
0 views
Comment: Comment: Would you recommend me any tool to assign protein family membership to an aminoa
written by v.berriosfarias • v.berriosfarias
0 votes
2 replies
925 views
Would you recommend me any tool to assign protein family membership to an aminoacidic fasta file?
protein-annotation fasta
updated by Dunois • Dunois • written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
0 views
Comment: Comment: What are unbinned contigs ?
written by v.berriosfarias • v.berriosfarias
0 votes
3 replies
2.3K views
What are unbinned contigs ?
binning mags metagenomics
updated by Mensur Dlakic Mensur Dlakic • written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
1.5K views
Any idea to plot ANI calculation results ?
genomes ani fastani
updated by Mensur Dlakic Mensur Dlakic • written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
568 views
Help on dendrimer building
dendrimer gromacs molecular-dynamics
written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
1.4K views
Any tutorial to graph a metabolic pathway from a metabolic model ?
r gem python gapseq
updated by VineethVenumadhavan • VineethVenumadhavan • written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
0 views
Comment: Comment: Would you recommend me a binning tool ?
written by v.berriosfarias • v.berriosfarias
0 votes
3 replies
3.4K views
Would you recommend me a binning tool ?
mags metagenomics binning
updated by Mensur Dlakic Mensur Dlakic • written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
1.7K views
How to add a refseq() slot to a MAG based phyloseq object ?
phyloseq fasta r mag
updated by andres.firrincieli andres.firrincieli • written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
0 views
Comment: Comment: Trying to use hmmer to search genes over metagenome assembled genomes
written by v.berriosfarias • v.berriosfarias
1 vote
1 reply
0 views
Answer: Answer: Trying to use hmmer to search genes over metagenome assembled genomes
written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
0 views
Comment: Comment: featureCounts: ERROR: failed to find the gene identifier attribute
written by v.berriosfarias • v.berriosfarias
0 votes
2 replies
2.2K views
featureCounts: ERROR: failed to find the gene identifier attribute
gtf featurecounts subread
updated by GenoMax GenoMax • written by v.berriosfarias • v.berriosfarias
0 votes
0 replies
783 views
Error when converting hmmsearch output to gff file
hmmer2gff gff hmmer
written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
1.1K views
error when converting hmmer table to off table
hmmer2gff gff hmmer
updated by GenoMax GenoMax • written by v.berriosfarias • v.berriosfarias
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