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0 votes
3 replies
1.4K views
RSeQC : infer_experiment.py Error: Could not retrieve index file
rseqc rna-seq
updated by Ram 4.5K • | written by Prawesh 0
0 votes
3 replies
1.3K views
Using ggplotly in R
ggplot ggplotly
updated by jared.andrews07 1.9K • | written by jen 1
0 votes
3 replies
1.4K views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart rnaseq kallisto
written by bioinfo 19
0 votes
3 replies
1.4K views
RNAseq RNA content
mrna linux rrna rna-seq rna
updated by noodle 65 • | written by doramora 1
0 votes
1 reply
1.1K views
Post-imputation QC for input into GWAS analyses
gwas prs
updated by LauferVA 497 • | written by graeme.thorn 11
0 votes
2 replies
2.0K views
Using Cutadapt to trim adapters from paired-end small RNA sequence data
trimming adapters cutadapt srna-seq smallrna
written by melissa.joubert 0
2 votes
1 reply
1.9K views
Extracting only 4-fold degenerate sites from gene sequences/alignments?
alignments
written by J. 5
0 votes
0 replies
520 views
Is there a real ground truth for CNV data?
cnv
written by jennyp0706 0
0 votes
3 replies
1.2K views
Biomart issue, why so few 3'utrs?
utr biomart
updated by GenoMax 16K • | written by RNAseqer 30
0 votes
1 reply
562 views
sci-RNA-seq
seurat sci-rna-seq
updated by Ram 4.5K • | written by kilcdincer 1
0 votes
4 replies
4.8K views
CNVkit for somatic copy number detection
cnv cnvkit exome wes
updated by Anitha 1 • | written by stephaniem 0
0 votes
8 replies
3.2K views
Overlapping Ranges within Granges object
genomicranges iranges granges
updated by Alex Reynolds 3.6K • | written by ntsopoul 6
0 votes
3 replies
863 views
How to access GWAVA software of data
gwava
updated by GenoMax 16K • | written by nonaddldy 1
0 votes
2 replies
1.0K views
Inquiry about deseq2 transformation
rna-seq deseq2
written by Chen 0
0 votes
1 reply
789 views
The total expressed genes in RNA-Seq data
rna-seq
updated by ATpoint 9.1K • | written by Pegasus 13
0 votes
1 reply
909 views
What is the bin size for Bamcompare?
chip-seq deeptools bamcompare
updated by Ram 4.5K • | written by Emily 2
0 votes
3 replies
2.1K views
Is there any way to modify this pie chart ?
pie ggplot r chart
updated by GenoMax 16K • | written by ohtang7 4
0 votes
0 replies
611 views
In what situations is 'outer' typically used when using anndata.concat()?
concat anndata scanpy
written by Spring 0
1 vote
3 replies
1.5K views
Is it necessary to do genotype quality filteration after snp calling with GATK
snp filteration genotype quality gatk
updated by mufernando 1 • | written by IdaHao0921 2
0 votes
3 replies
1.5K views
Snakemake wrapper issue
fastqc snakemake
updated by Wei-Chen Pan 0 • | written by Matvii Mykhailichenko 2
0 votes
5 replies
2.8K views
What does the 'E%' represent in BUSCO results?
busco
updated by Philipp Bayer 888 • | written by 林明德 0
0 votes
4 replies
5.5K views
MGLTools does not work in windows 11
windows-11 autodock windows mgltools
updated by Ram 4.5K • | written by mohyeddine.taleb 0
0 votes
4 replies
2.2K views
Help with IGV abbreviation
igv
updated by Ram 4.5K • | written by GeneC 0
0 votes
1 reply
781 views
How to process Bulk WES data?
wes wgs
updated by GenoMax 16K • | written by wyuan37 0
1 vote
1 reply
1.1K views
Can diamond prepdb be used to make a taxonomically aware database?
blast diamond taxonomy
updated by GenoMax 16K • | written by cedric.blais 2
0 votes
2 replies
1.6K views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
dna-seq variant-calling rna-seq illumina transcriptomics
written by David Langenberger 1.1K
0 votes
1 reply
661 views
Empty .best and .sing2 Files After Running Demuxlet
biosciences demuxlet
updated by Ram 4.5K • | written by eking28 0
0 votes
5 replies
1.9K views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
rna-seq featurecounts hisat
updated by Ram 4.5K • | written by Prawesh 0
1 vote
3 replies
2.8K views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
pe bam sam flag paired-end
written by kalavattam 85
0 votes
2 replies
2.2K views
How to interpret infinite odds ratio?
statistics
written by Lukas 0
0 votes
2 replies
1.2K views
Duplicated sequence samtools
bowtie2 samtools
updated by GenoMax 16K • | written by Moinuddin 0
0 votes
0 replies
484 views
reference-free assembly error assessment tools
assembly
written by lagartija 16
0 votes
4 replies
1.7K views
Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
rna-seq vcf variant-calling
written by Esraa 1
2 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, May 13, 2024
herald
written by Biostar 380
0 votes
1 reply
1.5K views
Splitting Seurat object by sample layers
seurat
updated by Ram 4.5K • | written by kilcdincer 1
0 votes
5 replies
2.1K views
Galaxy StringTie error
stringtie galaxy
updated by Ketan 0 • | written by trkfs 1
0 votes
0 replies
681 views
dbNSFP sift scores integration
sift vep dbnsfp
written by atariw 1
0 votes
1 reply
1.2K views
Mouse ribosome sequences in fasta format
fasta mm10 rrna
updated by GenoMax 16K • | written by octpus616 14
0 votes
4 replies
1.8K views
Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene prediction.
augustus annotation assembly genome
updated by Juke34 949 • | written by Vijith 10
0 votes
1 reply
764 views
consensus sequence calling
consensus
updated by bk11 312 • | written by G.S 6
0 votes
3 replies
1.1K views
Single-cell RNA-seq FindMarker and EnhancedVolcano Plot: most genes are low -log10P value
seurat single-cell scrna-seq r
updated by Ram 4.5K • | written by yau 0
0 votes
2 replies
1.4K views
imputation through beagle
panel beagle reference imputation
written by Bushra Bibi 8
0 votes
0 replies
662 views
Empty kernel in SEACells model
single-cell scanpy seacells python anndata
written by AlexStar 22
0 votes
1 reply
1.2K views
Long reads and fixing of mate-pair issues/marking duplicates with samtools
mate-pair samtools alignment
updated by aw7 40 • | written by Zeng Hao 4
0 votes
0 replies
628 views
Reference panel of normals for ensembl named refgenome
mutect2
written by gernophil 15
1 vote
0 replies
617 views
Producing sequence for splicing isoforms
isoform rmats splicing alternative spladder
written by tomas4482 43
0 votes
6 replies
2.5K views
BWA alignment
samtools bam
updated by a.alnawfal.1992 38 • | written by Vahid 0
0 votes
2 replies
1.5K views
Publish a Letter in higher impact vs Research article in lower impact
article letter journal
updated by ATpoint 9.1K • | written by jennyp0706 0
0 votes
1 reply
1.1K views
Manual Assembly and Protein Translation, HELP, assignment revision
sequence university assembly protein genomics
updated by Philipp Bayer 888 • | written by samRayne 2
0 votes
1 reply
939 views
Two-Sample Mendelian Randomization: Association between Instrumental Variable and Outcome
mendelian-randomization
updated by Ram 4.5K • | written by Nikki 0
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