RSeQC : infer_experiment.py Error: Could not retrieve index file
I am trying to use RSeQC for identifying strandness but I am getting error as Could not retrieve index file
Code
infer_experiment.py --i test-sorted.bam -r output.bed12
Output:
[E::idx_find_and_load] Could not retrieve index file for 'test-sorted.bam'
Reading reference gene model output.bed12 ... Done
Loading SAM/BAM file ... Total 200000 usable reads were sampled
Anyone knows how to address this issue?
1 answer
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