Hi everyone. I am trying to extract some simple directionality for the Reactome pathways, i.e. simple information of the type: Protein A activates Protein B …

Hi, I have an Excel table with gene symbols listed under the column "Symbol" (e.g., AKR1A1, adh) and their corresponding functions listed under the column …

Dear all, Starting from a conversation at : https://bioinformatics.stackexchange.com/questions/5400/how-to-convert-data-in-gmt-format-to-dataframe, would you please advise: Given a gmt file, how could extract the pathways that are associated …

Hi, I need to extract variants from VCF file for ACMG genes. I tried to create bed file from UCSC browser. But the bed file …

Hello! I am performing the GO/pathway analysis of my RNA-seq data using GSEA. I have many DEGs, about 3000 in total, and I got many …

I have an RNAseq results of drug treated vs control cells and performed pathways analysis with Up an down regulated genes. What I am trying …

Hi, I am trying to perform Pathway Analysis using ''Reactome PA'' package. The results I get do not include any Enriched Terms, even though it …

Hello I performed a ChIP Seq experiment and performed these steps MACS, CEAS, Gene Ontology Enrichment with GREAT . I have some enriched terms as …

<p>From a list of 3000 significantly differentially expressed genes (from a universe of 20000 genes using RNAseq gene expression data), I used DAVID Functional Annotation …

<p>Hi!</p> <p>Is their a way to extract a list of genes present in a KEGG pathway.</p> <p>For instance if I want to extraxct list of …