extracting a gene from a gmt file
Dear all,
Starting from a conversation at : https://bioinformatics.stackexchange.com/questions/5400/how-to-convert-data-in-gmt-format-to-dataframe, would you please advise:
Given a gmt file, how could extract the pathways that are associated with a specific gene?
Thank you very much!
Bogdan
1 answer
Log in to answer this question.
More posts like this
-
a webserver for the bigwig files
written by Bogdan
-
clonal populations in cancer samples
written by Bogdan
-
the closest gene to a breakpoint
written by Bogdan
-
computing chromothripsis on cancer genomes
written by Bogdan
-
single cell RNA-seq pipeline
written by Bogdan
-
extracting the exons coordinates on hg38
written by Bogdan
-
extracting Allele Read Counts
written by Bogdan
-
extracting the genes associated with the clusters
written by Bogdan
-
about the genome coordinates for mutations
written by Bogdan
-
running an application chromosome by chromosome
written by Bogdan
Link posted in SE (msigdb-BI) needs a registration and login. Please post example data.
Please use sensible tags that highlight the subject matter of your post. The current tags are nonsensical and show no effort.